Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 2.6e-156 555.4 298 100.0
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 4.3e-103 378.6 299 69.9
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 4.3e-103 378.6 306 70.6
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.1e-102 376.3 298 71.5
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.3e-96 356.3 300 68.0
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.2e-89 334.0 301 63.8
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.6e-89 333.6 309 64.7
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.1e-89 333.2 307 65.5
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.3e-88 329.7 305 64.3
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.0e-88 329.3 310 63.2
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.1e-88 328.6 315 63.2
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 5.1e-88 328.6 310 61.9
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 7.4e-87 324.7 302 62.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.6e-87 324.3 310 62.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 2.8e-86 322.8 302 61.6
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 3.7e-86 322.4 304 62.2
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 6.3e-86 321.6 298 63.1
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 6.3e-86 321.6 301 63.1
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 6.3e-86 321.6 302 63.2
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.8e-85 320.1 302 62.6
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.4e-85 319.7 302 62.6
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 4.1e-85 318.9 307 62.5
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 4.1e-85 318.9 307 62.5
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 6.9e-85 318.2 302 62.9
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 9.0e-85 317.8 300 63.3
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 3.4e-84 315.8 308 61.0
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 3.4e-84 315.8 309 62.8
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.5e-84 315.5 309 62.8
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.6e-84 314.7 306 61.8
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.7e-83 313.5 301 61.8
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 2.9e-83 312.8 316 59.8
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 8.4e-83 311.2 306 59.8
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.1e-82 310.8 316 60.4
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.9e-82 310.1 304 62.2
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.9e-82 310.1 301 62.1
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 1.9e-82 310.1 303 62.4
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.5e-82 309.7 308 61.0
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 3.2e-82 309.3 299 61.5
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 4.2e-82 308.9 310 60.3
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 4.2e-82 308.9 303 62.0
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 5.5e-82 308.5 299 63.2
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 7.2e-82 308.1 305 62.6
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 7.2e-82 308.1 308 59.7
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 9.3e-82 307.8 306 61.8
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 9.3e-82 307.8 304 61.8
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.2e-81 307.4 306 61.4
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 2.1e-81 306.6 302 60.9
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 3.6e-81 305.8 302 61.9
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.6e-81 305.4 310 61.3
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 6.1e-81 305.1 303 60.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 6.1e-81 305.1 298 60.1
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 7.9e-81 304.7 307 60.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 1.0e-80 304.3 304 61.2
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.0e-80 304.3 306 60.5
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.3e-80 303.9 302 61.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 3.0e-80 302.8 299 61.9
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 3.9e-80 302.4 303 61.7
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 3.9e-80 302.4 301 61.8
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 3.9e-80 302.4 313 57.8
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 5.1e-80 302.0 304 60.2
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 6.7e-80 301.6 216 72.7
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 8.7e-80 301.2 299 59.2
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 8.7e-80 301.2 310 59.0
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 8.7e-80 301.2 306 58.8
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 1.9e-79 300.1 302 60.3
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.5e-79 299.7 298 61.4
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.3e-79 299.3 302 60.6
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 3.3e-79 299.3 298 59.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 4.3e-79 298.9 303 60.4
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 9.7e-79 297.7 300 61.0
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.6e-78 297.0 301 58.1
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.6e-78 297.0 305 58.4
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.6e-78 297.0 304 58.6
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.8e-78 296.2 314 58.6
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 4.8e-78 295.4 304 60.9
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 6.3e-78 295.0 286 59.8
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 8.2e-78 294.7 311 57.9
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.1e-77 294.3 299 60.5
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.8e-77 293.5 298 60.7
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.8e-77 293.5 304 59.2
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 2.4e-77 293.1 310 57.4
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.4e-77 293.1 305 59.0
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.4e-77 293.1 304 59.9
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.1e-77 292.7 307 59.0
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 4.1e-77 292.4 299 58.9
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.3e-77 292.0 299 58.9
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 6.9e-77 291.6 303 58.7
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.0e-76 290.0 301 60.1
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 3.4e-76 289.3 194 77.3
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 5.9e-76 288.5 283 60.4
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 5.9e-76 288.5 286 60.5
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.3e-75 287.3 298 58.1
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.2e-75 286.6 196 75.0
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 2.2e-75 286.6 313 57.8
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.9e-75 286.2 302 59.3
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 6.5e-75 285.0 295 58.0
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.5e-75 285.0 330 53.9
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 8.5e-75 284.6 255 64.7
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 1.1e-74 284.3 311 58.2
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.1e-74 284.3 302 57.9
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.1e-74 284.3 301 57.8
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.4e-74 283.9 310 58.4
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.9e-74 283.5 255 64.3
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.9e-74 283.5 282 61.0
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.2e-74 282.7 255 64.3
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.2e-74 282.7 299 57.9
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 3.2e-74 282.7 298 59.1
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 3.2e-74 282.7 303 59.1
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 4.2e-74 282.3 299 57.2
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 7.2e-74 281.6 304 57.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.6e-73 280.4 305 57.7
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.1e-73 280.0 282 61.0
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.1e-73 280.0 289 58.5
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 2.7e-73 279.6 308 57.1
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 7.9e-73 278.1 312 56.4
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.0e-72 277.7 306 57.5
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.0e-72 277.7 306 58.5
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.0e-72 277.7 294 58.8
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.8e-72 276.9 304 57.6
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.8e-72 276.9 304 57.6
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.8e-72 276.9 308 56.2
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 1.8e-72 276.9 358 52.0
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 3.0e-72 276.2 370 50.3
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-70 270.8 194 75.3
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.4e-69 267.3 184 74.5
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.4e-69 266.5 298 54.7
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 3.1e-69 266.2 311 55.0
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 4.1e-69 265.8 302 53.3
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.0e-68 263.5 209 67.0
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.2e-67 260.0 204 68.1
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 5.5e-66 255.4 371 46.9
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 9.4e-66 254.6 244 60.7
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 5.2e-64 248.8 285 53.7
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.5e-63 247.3 235 57.9
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.6e-63 246.5 246 56.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.4e-63 245.7 286 53.8
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 4.4e-63 245.7 200 64.5
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.7e-63 244.6 290 52.1
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.3e-62 244.2 373 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.1e-61 241.1 231 57.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.4e-61 240.0 244 59.8
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.2e-60 237.7 258 55.4
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.6e-60 237.3 262 56.5
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 4.7e-57 225.7 313 48.2
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.7e-54 217.2 182 62.6
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.6e-49 200.7 180 57.8
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.7e-46 190.7 216 53.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.6e-44 184.1 183 55.7
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.9e-43 179.9 194 54.6
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.6e-33 147.5 90 77.8
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 2.1e-33 147.1 215 41.4
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.1e-33 145.6 108 72.2
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 9.8e-31 138.3 186 41.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.7e-28 130.2 137 55.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.3e-26 122.9 196 41.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 6.2e-25 119.0 293 35.2
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 7.0e-21 105.5 88 58.0
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.2e-20 104.8 63 79.4
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.0e-20 104.0 160 46.2
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 3.5e-20 103.2 63 77.8
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.1e-16 91.7 79 64.6
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 2.9e-14 83.6 168 35.7
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 5.6e-10 69.3 66 54.5


User provided reference genes

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