Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 0.0e+00 1827.0 921 100.0
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 0.0e+00 1254.6 978 68.6
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 0.0e+00 1181.8 928 68.9
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 0.0e+00 1129.0 922 66.3
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.8e-296 1022.7 900 63.8
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 1.6e-244 850.1 938 50.7
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 6.6e-227 791.6 949 49.2
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 6.6e-227 791.6 949 49.2
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 4.9e-222 775.4 946 48.8
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 1.3e-219 767.3 935 48.3
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 6.2e-217 758.4 936 47.3
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 9.2e-213 744.6 943 46.4
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 1.5e-207 727.2 961 46.1
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 5.4e-205 718.8 941 46.2
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 3.5e-204 716.1 939 45.9
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 6.0e-204 715.3 934 46.5
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.3e-203 714.1 958 45.2
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 2.3e-203 713.4 952 46.3
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 1.9e-202 710.3 948 46.0
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 2.0e-199 700.3 952 45.2
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 9.3e-197 691.4 958 44.8
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 9.3e-197 691.4 952 44.4
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 4.6e-196 689.1 946 44.6
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 7.9e-196 688.3 959 44.3
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 1.3e-195 687.6 947 43.5
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 9.6e-194 681.4 948 44.5
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 6.9e-192 675.2 961 44.1
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 1.1e-189 667.9 944 44.1
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 3.2e-189 666.4 941 44.2
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 4.2e-189 666.0 990 41.8
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 9.3e-189 664.8 948 43.9
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 1.6e-188 664.1 948 43.7
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 4.6e-188 662.5 947 43.4
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 1.8e-187 660.6 945 42.4
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 2.3e-187 660.2 947 43.3
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 1.1e-186 657.9 945 43.5
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.5e-186 657.5 1018 41.8
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 1.9e-186 657.1 965 43.2
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 2.5e-186 656.8 842 45.8
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 5.6e-186 655.6 948 43.4
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 2.8e-185 653.3 942 43.4
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 1.5e-183 647.5 942 42.8
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 4.9e-182 642.5 945 42.8
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 6.5e-182 642.1 997 41.6
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 1.9e-181 640.6 956 41.6
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 7.1e-181 638.6 965 42.4
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 9.3e-181 638.3 938 41.9
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 9.3e-181 638.3 952 42.2
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.7e-180 636.7 952 43.1
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-180 636.3 952 43.0
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 4.6e-180 636.0 952 43.0
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 7.4e-178 628.6 961 41.5
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 1.6e-177 627.5 982 41.4
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.2e-177 625.2 953 42.4
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 4.1e-176 622.9 957 40.4
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 1.7e-174 617.5 964 41.6
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 1.7e-174 617.5 964 41.6
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 2.9e-174 616.7 955 41.7
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 2.9e-174 616.7 955 41.7
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 2.9e-174 616.7 946 40.9
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 2.9e-174 616.7 992 41.6
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 6.5e-174 615.5 965 41.5
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 6.5e-174 615.5 964 41.5
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.1e-173 614.8 954 41.2
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 3.2e-173 613.2 953 40.7
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 3.2e-173 613.2 959 41.3
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.2e-172 611.3 968 41.4
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 1.2e-172 611.3 841 45.3
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 1.6e-172 610.9 966 40.6
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 6.7e-171 605.5 959 41.4
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 6.7e-171 605.5 833 44.9
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 1.1e-170 604.7 965 39.9
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 1.1e-170 604.7 965 40.2
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 8.2e-169 598.6 951 40.9
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 8.2e-169 598.6 948 40.9
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 4.5e-167 592.8 940 40.6
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.0e-166 591.7 936 41.0
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 1.1e-165 588.2 956 40.0
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 1.6e-164 584.3 947 40.5
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 5.1e-163 579.3 966 39.5
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 1.7e-161 574.3 951 39.5
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.5e-154 551.2 838 41.3
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 7.0e-152 542.3 940 37.3
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 7.7e-151 538.9 953 39.2
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 2.9e-150 537.0 948 38.7
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 2.9e-150 537.0 943 38.6
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.6e-148 531.2 932 39.1
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 4.0e-147 526.6 946 37.7
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 4.4e-146 523.1 942 37.4
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 6.3e-145 519.2 817 40.8
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 1.8e-144 517.7 937 37.8
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.3e-142 511.5 932 37.4
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 5.5e-141 506.1 941 37.8
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.6e-140 504.6 942 37.4
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 2.3e-139 500.7 937 37.2
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 2.3e-139 500.7 958 36.1
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 1.5e-138 498.0 941 37.1
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 2.6e-138 497.3 932 37.8
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 4.4e-138 496.5 934 37.4
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 3.7e-137 493.4 945 36.5
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 5.4e-136 489.6 938 36.7
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 4.5e-135 486.5 938 35.4
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 2.3e-134 484.2 976 36.3
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 2.5e-133 480.7 967 34.9
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 6.1e-132 476.1 958 35.5
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 1.5e-130 471.5 936 36.1
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 5.4e-128 463.0 692 42.9
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 1.6e-124 451.4 965 34.4
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 2.3e-123 447.6 701 41.1
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 2.2e-121 441.0 1014 33.0
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 3.2e-120 437.2 706 40.5
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 7.8e-119 432.6 947 33.5
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 2.1e-116 424.5 706 39.2
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 4.7e-116 423.3 661 41.1
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 1.5e-109 401.7 703 38.0
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 6.8e-107 392.9 791 36.4
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.0e-102 379.0 726 36.0
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 6.8e-99 366.3 946 30.7
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 2.6e-90 337.8 571 39.8
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 4.9e-89 333.6 414 46.9
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 4.9e-89 333.6 661 37.7
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 6.6e-86 323.2 932 29.6
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 3.3e-85 320.9 932 29.0
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 2.1e-84 318.2 590 37.1
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 6.2e-84 316.6 933 29.4
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 6.9e-83 313.2 566 39.0
MBI06_g22353_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 9.0e-83 312.8 391 47.3
vmacro15027 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 5.8e-74 283.5 306 50.7
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 1.3e-73 282.3 438 40.6
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.4e-72 278.9 651 32.9
vmacro15028 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 7.1e-64 250.0 275 50.5
Zm00001eb254680 Zea mays HOM05D002969 ORTHO05D003308 9.7e-61 239.6 355 41.7
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 6.3e-60 236.9 379 40.4
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 6.3e-60 236.9 665 29.9
CiPaw.01G219400 Carya illinoinensis HOM05D002969 ORTHO05D003308 8.5e-57 226.5 258 48.4
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 2.5e-56 224.9 476 34.7
vmacro15024 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.2e-55 222.6 262 46.9
Zm00001eb247960 Zea mays HOM05D002969 ORTHO05D003308 7.9e-55 219.9 325 41.5
Zm00001eb254770 Zea mays HOM05D002969 ORTHO05D003308 6.3e-52 210.3 311 40.5
Cpa.g.sc34.76 Carica papaya HOM05D002969 ORTHO05D003308 8.2e-52 209.9 256 46.1
vmacro15025 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.4e-51 209.1 262 46.6
PSO017G1278 Papaver somniferum HOM05D002969 ORTHO05D003308 2.1e-47 195.3 254 44.5
Zm00001eb247980 Zea mays HOM05D002969 ORTHO05D003308 1.4e-46 192.6 290 40.0
AT1G59460 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.5e-40 170.6 209 49.3
Lalb_Chr10g0094391 Lupinus albus HOM05D002969 ORTHO05D003308 9.1e-35 153.3 207 42.0
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 2.0e-34 152.1 100 78.0
Os05g0569900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 2.9e-33 148.3 269 35.3
GSVIVG01001689001 Vitis vinifera HOM05D002969 ORTHO05D003308 1.6e-31 142.5 170 45.9
PSO478G1045 Papaver somniferum HOM05D002969 ORTHO05D003308 3.6e-31 141.4 167 50.9
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 4.4e-29 134.4 341 31.1
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 1.4e-27 129.4 276 33.3
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.4e-27 129.4 276 33.3
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-26 124.8 270 34.1
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.5e-24 118.6 272 31.2
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 6.8e-22 110.5 463 22.0
CAN.G397.52 Capsicum annuum HOM05D002969 ORTHO05D003308 5.7e-21 107.5 123 45.5
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.2e-18 99.8 101 49.5
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 2.7e-18 98.6 123 40.7
RcHm_v2.0_Chr6g0291541 Rosa chinensis HOM05D002969 ORTHO05D003308 4.0e-14 84.7 127 37.0
COL.COLO4_30699 Corchorus olitorius HOM05D002969 ORTHO05D003308 5.2e-14 84.3 125 39.2
Nitab4.5_0010825g0020 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.4e-13 81.6 139 36.7
Peaxi162Scf00006g00211 Petunia axillaris HOM05D002969 ORTHO05D003308 3.4e-13 81.6 115 39.1
SEGI_18157 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 4.1e-11 74.7 94 44.7
Zm00001eb254790 Zea mays HOM05D002969 ORTHO05D003308 7.8e-10 70.5 122 38.5
Potri.001G170001 Populus trichocarpa HOM05D002969 ORTHO05D003308 1.5e-08 66.2 83 37.3
AUR62025129 Chenopodium quinoa HOM05D002200 ORTHO05D002294 5.6e-08 64.3 56 62.5
SEGI_18101 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.0e-06 60.1 71 42.3
CARHR117350 Cardamine hirsuta HOM05D002969 ORTHO05D003308 1.4e-06 59.7 73 46.6
COL.COLO4_38602 Corchorus olitorius HOM05D002969 ORTHO05D003308 5.2e-06 57.8 85 34.1


User provided reference genes

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