Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 100.0
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 4.7e-37 157.9 118 88.1
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.1e-36 156.8 118 87.3
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 1.1e-36 156.8 118 86.4
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.4e-36 156.4 118 88.1
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.4e-36 156.4 118 88.1
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.4e-36 156.4 118 88.1
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 1.4e-36 156.4 118 88.1
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 1.8e-36 156.0 118 87.3
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 1.8e-36 156.0 118 87.3
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 1.8e-36 156.0 118 87.3
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.8e-36 156.0 118 87.3
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.3e-36 155.6 118 87.3
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 87.3
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 86.4
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 86.4
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 87.3
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 87.3
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 86.4
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 85.6
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 6.8e-36 154.1 118 85.6
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 6.8e-36 154.1 118 86.4
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 8.9e-36 153.7 118 85.6
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 82.2
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 85.6
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 1.2e-35 153.3 118 85.6
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.2e-35 153.3 118 85.6
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 1.5e-35 152.9 118 84.7
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.0e-35 152.5 118 84.7
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.0e-35 152.5 118 84.7
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 2.0e-35 152.5 118 86.4
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 2.0e-35 152.5 118 86.4
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 81.4
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 81.4
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 81.4
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 81.4
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 3.4e-35 151.8 118 84.7
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 4.4e-35 151.4 118 81.4
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 4.4e-35 151.4 118 84.7
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 4.4e-35 151.4 118 84.7
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 5.8e-35 151.0 118 77.1
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 9.9e-35 150.2 118 84.7
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 9.9e-35 150.2 118 84.7
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 9.9e-35 150.2 116 87.1
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.3e-34 149.8 118 85.6
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 3.8e-34 148.3 118 79.7
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 8.4e-34 147.1 118 87.3
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 8.4e-34 147.1 116 76.7
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 8.4e-34 147.1 118 80.5
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 1.4e-33 146.4 118 83.1
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 1.4e-33 146.4 118 76.3
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.4e-33 146.4 118 83.1
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 3.2e-33 145.2 116 87.1
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 5.4e-33 144.4 118 82.2
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 5.4e-33 144.4 118 83.9
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 7.1e-33 144.1 118 82.2
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 1.2e-32 143.3 118 82.2
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 1.2e-32 143.3 118 82.2
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 1.2e-32 143.3 118 83.9
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.6e-32 142.9 118 68.6
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 2.1e-32 142.5 118 81.4
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 2.7e-32 142.1 118 81.4
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 2.7e-32 142.1 118 79.7
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 2.7e-32 142.1 118 79.7
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 2.7e-32 142.1 118 81.4
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.7e-32 142.1 118 81.4
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 6.0e-32 141.0 118 78.8
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 7.8e-32 140.6 118 80.5
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 2.3e-31 139.0 118 80.5
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 3.0e-31 138.7 118 79.7
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 3.0e-31 138.7 118 79.7
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 3.0e-31 138.7 118 79.7
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 3.0e-31 138.7 118 79.7
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 3.0e-31 138.7 118 78.0
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 5.1e-31 137.9 118 78.0
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 6.6e-31 137.5 118 78.8
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 8.6e-31 137.1 116 75.9
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.1e-30 136.7 118 79.7
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.5e-30 136.3 118 78.0
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 1.5e-30 136.3 118 78.0
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 4.3e-30 134.8 118 78.0
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.6e-29 132.9 118 76.3
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 4.0e-28 128.3 118 82.2
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 7.6e-27 124.0 108 82.4
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 1.3e-26 123.2 150 52.7
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 2.9e-26 122.1 101 84.2
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 4.2e-25 118.2 118 80.5
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 9.3e-25 117.1 103 79.6
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 7.8e-24 114.0 102 82.4
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.7e-23 112.8 104 77.9
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 8.7e-23 110.5 101 79.2
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 3.3e-22 108.6 102 76.5
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 9.6e-22 107.1 101 77.2
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 3.4e-19 98.6 90 77.8
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 6.4e-18 94.4 90 76.7
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 7.1e-17 90.9 92 67.4
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.1e-16 89.4 92 69.6
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 2.7e-16 89.0 45 97.8
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.7e-16 89.0 45 97.8
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 6.0e-16 87.8 45 95.6
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.3e-15 86.7 45 95.6
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.1e-14 83.6 119 49.6
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 3.3e-14 82.0 45 88.9
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 4.3e-14 81.6 47 93.6
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 4.3e-14 81.6 47 93.6
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 5.6e-14 81.3 47 93.6
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 5.6e-14 81.3 47 91.5
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.3e-13 80.1 47 91.5
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 2.1e-13 79.3 96 78.1
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 3.7e-13 78.6 47 89.4
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 4.8e-13 78.2 47 87.2
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 8.1e-13 77.4 47 87.2
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.4e-12 75.9 47 87.2
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 6.9e-12 74.3 125 39.2
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 2.6e-11 72.4 47 83.0
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 1.7e-10 69.7 120 40.0
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 1.8e-07 59.7 47 74.5


User provided reference genes

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