Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 9.2e-50 199.9 100 100.0
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.2e-36 156.4 102 75.5
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-32 142.9 101 73.3
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.5e-31 139.4 102 69.6
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 5.3e-29 131.0 95 64.2
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.5e-28 129.4 87 67.8
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 2.0e-28 129.0 89 66.3
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.0e-28 129.0 95 63.2
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.6e-28 128.6 99 62.6
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 3.4e-28 128.3 98 58.2
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 4.4e-28 127.9 104 61.5
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 5.8e-28 127.5 95 62.1
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 5.8e-28 127.5 95 62.1
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.6e-28 127.1 87 66.7
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 7.6e-28 127.1 89 66.3
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.3e-27 126.3 93 67.7
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-27 126.3 92 64.1
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-27 126.3 102 61.8
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.7e-27 125.9 89 64.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.7e-27 125.9 97 62.9
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.7e-27 125.9 94 62.8
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.7e-27 125.9 93 62.4
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.2e-27 125.6 97 61.9
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.2e-27 125.6 89 65.2
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.2e-27 125.6 89 66.3
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.9e-27 125.2 95 60.0
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.8e-27 124.8 91 62.6
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 3.8e-27 124.8 96 59.4
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.8e-27 124.8 90 65.6
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 3.8e-27 124.8 95 62.1
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 6.4e-27 124.0 88 68.2
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 6.4e-27 124.0 89 64.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 8.4e-27 123.6 91 62.6
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 8.4e-27 123.6 94 61.7
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 8.4e-27 123.6 91 63.7
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 8.4e-27 123.6 97 59.8
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.1e-26 123.2 94 61.7
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.1e-26 123.2 89 64.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.1e-26 123.2 94 61.7
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.4e-26 122.9 89 64.0
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.4e-26 122.9 93 60.2
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.4e-26 122.9 93 60.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.4e-26 122.9 95 61.1
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.4e-26 122.9 95 61.1
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.4e-26 122.9 89 65.2
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.9e-26 122.5 95 61.1
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.4e-26 122.1 95 62.1
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.4e-26 122.1 93 61.3
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.4e-26 122.1 97 59.8
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 3.2e-26 121.7 89 62.9
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 3.2e-26 121.7 89 62.9
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 3.2e-26 121.7 89 62.9
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 3.2e-26 121.7 89 65.2
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 3.2e-26 121.7 93 61.3
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 3.2e-26 121.7 93 60.2
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.2e-26 121.3 93 61.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 4.2e-26 121.3 93 61.3
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 7.1e-26 120.6 94 60.6
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 7.1e-26 120.6 89 61.8
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 9.3e-26 120.2 89 64.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 9.3e-26 120.2 93 59.1
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 9.3e-26 120.2 83 66.3
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 9.3e-26 120.2 94 60.6
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.2e-25 119.8 94 57.4
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.2e-25 119.8 94 57.4
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.2e-25 119.8 93 60.2
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 1.2e-25 119.8 94 59.6
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.6e-25 119.4 89 61.8
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 2.1e-25 119.0 89 62.9
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.1e-25 119.0 89 62.9
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.1e-25 119.0 89 62.9
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.1e-25 119.0 89 62.9
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.1e-25 119.0 89 62.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.7e-25 118.6 93 58.1
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 2.7e-25 118.6 89 62.9
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 3.5e-25 118.2 97 56.7
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 3.5e-25 118.2 93 59.1
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.0e-25 117.5 89 62.9
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.0e-24 116.7 94 58.5
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.0e-24 116.7 116 51.7
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.3e-24 115.5 89 62.9
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.3e-24 115.5 87 58.6
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 3.0e-24 115.2 87 62.1
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 3.0e-24 115.2 87 62.1
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 3.0e-24 115.2 94 59.6
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 3.0e-24 115.2 89 60.7
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.9e-24 114.8 87 58.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 8.7e-24 113.6 93 57.0
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-23 113.2 89 61.8
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.1e-23 113.2 89 61.8
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.1e-23 113.2 94 57.4
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.1e-23 113.2 89 58.4
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-23 113.2 97 56.7
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.5e-23 112.8 87 58.6
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.5e-23 112.8 97 56.7
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.9e-23 112.5 94 58.5
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.5e-23 112.1 106 57.5
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 2.5e-23 112.1 87 62.1
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.3e-23 111.7 86 55.8
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.3e-23 111.3 102 56.9
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 5.6e-23 110.9 89 58.4
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 5.6e-23 110.9 106 53.8
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 7.3e-23 110.5 83 63.9
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.6e-22 109.4 87 60.9
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.6e-22 109.4 86 61.6
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.1e-22 109.0 89 56.2
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 4.8e-22 107.8 77 63.6
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 6.2e-22 107.5 68 79.4
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 6.2e-22 107.5 77 63.6
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 8.1e-22 107.1 102 54.9
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 8.1e-22 107.1 90 55.6
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.1e-21 106.7 83 59.0
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-21 106.7 94 56.4
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-21 106.7 94 56.4
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.4e-21 106.3 89 58.4
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.4e-21 106.3 84 60.7
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.4e-21 105.5 94 59.6
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.1e-21 105.1 85 63.5
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 4.0e-21 104.8 97 55.7
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 5.3e-21 104.4 106 49.1
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.2e-20 103.2 88 61.4
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.0e-20 102.4 73 60.3
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 3.4e-20 101.7 90 56.7
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.8e-19 98.2 72 70.8
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 6.4e-19 97.4 98 50.0
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 8.4e-19 97.1 98 49.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.1e-18 96.7 98 50.0
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.9e-18 95.9 95 50.5
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.2e-18 94.7 95 49.5
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.1e-18 94.0 96 52.1
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 9.3e-18 93.6 84 53.6
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.0e-16 90.1 63 65.1
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.3e-16 89.0 67 62.7
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.3e-14 83.2 83 47.0
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.8e-14 81.3 55 67.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.8e-13 79.3 62 59.7
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.4e-13 79.0 92 47.8
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 9.0e-13 77.0 58 60.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.2e-12 76.6 62 59.7
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 4.5e-12 74.7 51 60.8
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.0e-11 73.6 101 42.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.3e-11 73.2 60 61.7
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 8.4e-11 70.5 66 59.1
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 6.0e-09 64.3 64 56.2
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.5e-07 59.7 98 37.8
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 4.3e-07 58.2 72 40.3


User provided reference genes

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