Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 3.1e-116 421.8 210 100.0
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.2e-61 239.6 150 82.7
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.8e-61 238.8 148 82.4
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.1e-60 237.3 147 83.0
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.4e-60 236.9 138 86.2
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.9e-60 236.5 146 84.9
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 3.2e-60 235.7 203 67.0
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 7.8e-59 231.1 146 81.5
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 8.7e-58 227.6 146 80.8
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-57 227.3 146 81.5
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-57 227.3 146 81.5
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-57 227.3 146 81.5
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.1e-57 227.3 147 80.3
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 2.5e-57 226.1 145 79.3
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 5.6e-57 224.9 146 80.1
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 5.6e-57 224.9 146 78.8
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 9.6e-57 224.2 146 80.8
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.6e-57 224.2 147 78.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.3e-56 223.8 148 79.1
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 2.1e-56 223.0 146 79.5
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 2.1e-56 223.0 146 79.5
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.2e-56 221.5 146 79.5
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 6.2e-56 221.5 147 75.5
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.1e-56 221.1 146 79.5
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 8.1e-56 221.1 145 79.3
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 8.1e-56 221.1 146 79.5
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.1e-55 220.7 146 78.8
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.4e-55 220.3 145 79.3
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.4e-55 219.5 147 78.2
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.4e-55 219.5 147 78.2
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.4e-55 219.5 147 77.6
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.1e-55 219.2 149 77.2
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 5.3e-55 218.4 147 78.2
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 5.3e-55 218.4 143 79.0
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 6.9e-55 218.0 146 77.4
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 9.0e-55 217.6 154 74.0
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 9.0e-55 217.6 145 77.9
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.2e-54 217.2 146 78.1
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.5e-54 216.9 145 77.9
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.5e-54 216.9 146 78.1
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.5e-54 216.9 146 76.7
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.0e-54 216.5 146 80.1
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.6e-54 216.1 146 80.1
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.6e-54 216.1 147 77.6
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 3.4e-54 215.7 146 78.1
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 3.4e-54 215.7 146 76.7
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.4e-54 215.7 145 75.2
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.4e-54 215.7 146 76.0
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.4e-54 215.7 146 76.0
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.4e-54 215.3 146 76.0
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.4e-54 215.3 146 76.0
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 4.4e-54 215.3 145 77.9
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.8e-54 214.9 148 75.7
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 7.6e-54 214.5 146 77.4
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 9.9e-54 214.2 147 78.9
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 9.9e-54 214.2 147 78.2
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.3e-53 213.8 147 77.6
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.7e-53 213.4 146 76.7
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 1.7e-53 213.4 147 77.6
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.7e-53 213.4 148 75.0
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 1.7e-53 213.4 147 78.2
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.2e-53 213.0 143 76.9
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.2e-53 213.0 143 76.9
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 2.2e-53 213.0 147 78.9
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 2.2e-53 213.0 143 76.9
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 2.9e-53 212.6 150 76.7
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 2.9e-53 212.6 142 77.5
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 8.4e-53 211.1 146 76.0
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 8.4e-53 211.1 146 76.7
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 5.4e-52 208.4 146 74.7
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 5.4e-52 208.4 147 76.9
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 2.1e-51 206.5 146 74.7
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.3e-50 203.8 149 74.5
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 2.3e-50 203.0 147 74.8
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 3.9e-50 202.2 198 60.1
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 6.6e-50 201.4 149 70.5
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.1e-49 200.7 147 73.5
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 1.5e-49 200.3 147 70.1
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.9e-49 199.9 145 74.5
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 5.6e-49 198.4 139 77.7
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.3e-48 197.2 156 70.5
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-48 197.2 146 74.0
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 6.2e-48 194.9 149 70.5
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.1e-47 194.1 148 73.6
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.4e-47 193.0 152 70.4
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 5.3e-47 191.8 150 69.3
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 5.3e-47 191.8 150 69.3
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 9.0e-47 191.0 154 69.5
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.2e-46 190.7 152 69.7
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.0e-46 189.9 150 70.0
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.6e-46 189.5 153 69.3
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 2.6e-46 189.5 158 66.5
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 2.6e-46 189.5 147 70.1
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.2e-45 186.4 153 66.7
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 6.4e-45 184.9 147 70.1
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.4e-45 184.5 145 67.6
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.1e-44 184.1 150 67.3
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.1e-44 184.1 152 67.8
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.1e-44 184.1 154 66.9
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.4e-44 183.7 145 67.6
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.4e-44 183.0 145 67.6
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 3.2e-44 182.6 154 66.2
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 4.6e-43 178.7 120 77.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.0e-42 176.0 147 66.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.7e-42 174.5 147 65.3
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.4e-39 167.2 111 79.3
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.4e-39 166.4 138 68.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.1e-39 166.0 140 64.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.1e-39 166.0 140 64.3
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.2e-38 164.1 109 78.9
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.0e-38 163.3 106 81.1
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.6e-38 162.9 149 62.4
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.9e-36 156.8 136 65.4
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 5.5e-36 155.2 150 57.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 7.1e-36 154.8 102 77.5
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.2e-35 154.1 145 59.3
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.1e-35 153.3 102 76.5
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 7.9e-35 151.4 121 66.1
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.1e-33 147.5 147 59.9
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 1.9e-33 146.7 100 76.0
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 4.3e-33 145.6 168 53.6
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 2.2e-29 133.3 81 81.5
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.2e-29 133.3 154 52.6
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 4.6e-27 125.6 134 51.5
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 1.0e-26 124.4 131 55.0
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 1.8e-26 123.6 89 68.5
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 6.7e-26 121.7 151 47.7
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.1e-19 100.1 71 74.6
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 3.6e-19 99.4 78 64.1
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 3.0e-18 96.3 79 55.7
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.7e-18 95.1 71 64.8
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.7e-18 95.1 71 64.8
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 8.8e-18 94.7 92 56.5
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 2.0e-17 93.6 79 57.0
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 5.7e-17 92.0 134 41.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.3e-15 85.5 69 55.1
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 5.3e-15 85.5 71 57.7
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-14 84.3 69 56.5
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 2.0e-14 83.6 143 42.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.5e-14 82.4 69 55.1
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.5e-14 82.4 69 55.1
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.2e-12 75.1 77 50.6
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 7.9e-11 71.6 72 52.8
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.6e-09 66.6 124 41.1
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 3.7e-08 62.8 70 45.7
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 4.8e-08 62.4 72 45.8
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 7.7e-06 55.1 51 58.8


User provided reference genes

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