Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 0.0e+00 1399.0 716 100.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.4e-264 915.6 683 68.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.7e-252 875.5 683 66.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.4e-248 862.4 733 62.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 6.0e-151 538.9 686 44.5
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.7e-142 510.8 711 43.5
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.3e-133 479.9 692 40.8
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.1e-132 477.2 683 42.2
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.1e-131 474.9 689 40.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.1e-131 474.9 682 40.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-131 474.2 692 40.5
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 3.1e-131 473.4 701 41.7
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 4.0e-131 473.0 689 39.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 9.0e-131 471.9 688 41.7
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 9.0e-131 471.9 694 40.2
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.2e-130 471.5 692 41.2
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.2e-130 471.5 693 41.8
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.5e-130 471.1 686 42.0
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 3.4e-130 469.9 692 41.2
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.8e-130 469.2 689 39.6
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 7.6e-130 468.8 694 40.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.8e-129 466.5 692 41.3
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 3.8e-129 466.5 687 40.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 6.4e-129 465.7 694 40.5
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 8.4e-129 465.3 690 41.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.4e-128 464.5 582 45.5
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.4e-128 463.8 689 39.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.5e-128 462.6 696 40.7
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 7.1e-128 462.2 692 39.3
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.0e-127 459.1 725 37.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 5.1e-126 456.1 690 39.6
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.1e-126 456.1 619 42.8
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 4.3e-125 453.0 689 40.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.6e-125 452.6 686 40.1
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.8e-123 447.6 683 38.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.1e-123 446.8 689 38.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.1e-123 446.8 700 39.4
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.3e-123 446.0 689 38.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.5e-122 444.5 690 39.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.5e-122 444.5 683 38.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.0e-122 444.1 697 38.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.6e-122 443.7 685 39.6
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 3.4e-122 443.4 685 39.3
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.4e-122 443.4 701 38.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.7e-121 441.0 691 38.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 6.5e-121 439.1 683 38.8
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.5e-120 436.0 687 37.8
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.6e-119 434.5 637 41.1
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 7.9e-119 432.2 684 38.6
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-117 427.6 692 39.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.6e-116 424.5 687 39.2
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.8e-116 423.7 584 42.5
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.4e-115 420.6 696 37.2
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.6e-114 415.6 688 37.2
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.8e-113 413.3 694 37.5
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 3.8e-113 413.3 691 36.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 5.0e-113 412.9 683 37.6
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.1e-112 411.8 683 37.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.2e-112 409.8 689 36.6
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.2e-111 408.3 692 36.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.7e-111 407.1 691 36.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.3e-110 404.8 688 36.8
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 5.1e-110 402.9 698 35.1
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.5e-109 400.6 703 36.3
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.5e-109 400.6 691 35.3
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.3e-109 400.2 695 35.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.4e-109 399.1 734 36.8
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 2.8e-108 397.1 636 36.6
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 6.3e-108 396.0 694 36.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.2e-106 391.7 688 37.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-106 391.3 689 36.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 3.4e-106 390.2 785 33.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.4e-106 390.2 699 35.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 6.5e-105 386.0 712 36.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.9e-104 384.4 694 37.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 5.5e-104 382.9 700 34.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 6.1e-103 379.4 700 35.3
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.5e-101 374.8 692 33.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-101 374.4 692 34.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 3.3e-101 373.6 694 33.6
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-100 371.7 696 33.9
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.8e-100 370.5 696 33.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.8e-100 370.5 576 38.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.1e-99 368.6 691 34.6
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-99 368.2 702 35.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.1e-99 366.7 697 33.4
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.2e-98 365.2 697 33.4
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-97 361.3 698 33.2
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.8e-97 360.1 780 33.2
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.5e-97 359.4 689 34.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.9e-96 357.8 691 34.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.0e-94 350.5 729 33.7
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.7e-92 343.6 725 32.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.0e-90 337.8 697 33.3
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.9e-89 334.0 533 39.6
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.0e-87 325.9 704 33.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.3e-86 324.3 532 38.2
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.5e-82 310.5 546 36.1
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.2e-81 307.8 631 32.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.5e-80 304.3 636 33.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 5.5e-80 303.1 486 39.1
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.7e-79 300.8 691 32.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 3.4e-77 293.9 723 29.5
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 9.8e-77 292.4 685 30.7
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-74 285.4 707 30.0
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.5e-72 278.5 733 29.7
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.6e-69 267.7 550 34.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.8e-65 253.8 709 28.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.8e-63 247.7 522 33.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 5.2e-62 243.4 526 31.9
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 2.0e-58 231.5 586 30.0
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 7.3e-56 223.0 689 28.2
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 9.5e-56 222.6 687 26.6
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.8e-54 218.4 713 26.9
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.0e-53 214.9 490 31.8
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 8.3e-52 209.5 704 27.1
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.6e-50 203.8 371 34.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.2e-47 195.7 502 28.7
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.1e-47 193.0 342 35.1
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 5.6e-40 170.2 520 28.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 6.8e-38 163.3 210 42.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-31 142.5 227 38.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 3.1e-30 137.9 206 41.3
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.6e-29 134.8 247 36.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.9e-29 132.9 210 39.5
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.2e-26 125.9 492 26.4
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.0e-26 123.6 645 24.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.0e-26 123.6 645 24.5
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.0e-25 121.3 478 25.7
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-24 118.2 191 36.6
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.3e-23 115.9 191 38.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-22 112.5 206 37.4
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-18 99.4 222 31.5
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.1e-14 84.7 186 29.0
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 7.6e-13 80.1 276 27.5
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.1e-11 73.6 70 57.1
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-10 71.6 176 26.7
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.8e-09 68.9 114 37.7


User provided reference genes

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