Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g014380 Amaranthus hybridus HOM05D000876 ORTHO05D002662 1.6e-141 506.1 260 100.0
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 2.8e-90 335.9 334 57.5
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 6.2e-90 334.7 334 57.2
Ah.08g220620 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.0e-63 247.7 241 60.6
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 6.8e-36 155.2 161 54.0
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 6.3e-34 148.7 269 38.7
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.7e-32 143.3 217 42.4
Hund08681 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.0e-31 141.4 217 41.9
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.7e-29 132.5 217 41.0
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.7e-29 132.5 206 42.2
Hund08047 Selenicereus undatus HOM05D000876 ORTHO05D002662 2.8e-26 123.2 259 35.1
Hund26462 Selenicereus undatus HOM05D000876 ORTHO05D002662 5.6e-22 109.0 204 39.2
Hund26024 Selenicereus undatus HOM05D000876 ORTHO05D002662 4.0e-20 102.8 210 35.2
Hund09957 Selenicereus undatus HOM05D000876 ORTHO05D002662 8.6e-15 85.1 170 37.6
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 5.6e-14 82.4 197 32.5
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-13 80.9 221 28.1
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 2.8e-13 80.1 208 30.8
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 8.0e-13 78.6 216 29.2
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 2.3e-12 77.0 192 31.2
arahy.Tifrunner.gnm1.ann1.GL17HH Arachis hypogaea HOM05D000034 ORTHO05D000037 3.1e-12 76.6 210 27.1
arahy.Tifrunner.gnm1.ann1.R6BV2D Arachis hypogaea HOM05D000876 ORTHO05D000285 3.1e-12 76.6 186 27.4
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 4.0e-12 76.3 202 29.2
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 5.2e-12 75.9 186 29.0
Os05g0596300 Oryza sativa ssp. japonica HOM05D031168 ORTHO05D030408 6.8e-12 75.5 189 27.0
arahy.Tifrunner.gnm1.ann1.L4SQ9F Arachis hypogaea HOM05D000034 ORTHO05D000037 8.9e-12 75.1 186 28.0
CsaV3_5G004940 Cucumis sativus L. HOM05D000876 ORTHO05D000285 2.0e-11 73.9 196 27.6
Hund20247 Selenicereus undatus HOM05D000876 ORTHO05D002662 2.0e-11 73.9 168 35.1
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 4.4e-11 72.8 186 26.9
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 4.4e-11 72.8 186 28.0
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 5.8e-11 72.4 214 29.0
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 7.5e-11 72.0 186 26.3
Actinidia38818 Actinidia chinensis HOM05D000876 ORTHO05D000285 9.8e-11 71.6 189 29.1
arahy.Tifrunner.gnm1.ann1.2F6TQ9 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.3e-10 71.2 186 28.0
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.3e-10 71.2 197 25.4
arahy.Tifrunner.gnm1.ann1.I2TZJW Arachis hypogaea HOM05D000876 ORTHO05D000285 1.3e-10 71.2 186 28.0
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.3e-10 71.2 202 28.2
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 1.7e-10 70.9 197 28.9
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.7e-10 69.7 208 26.9
Ciclev10013387m.g Citrus clementina HOM05D000876 ORTHO05D034797 3.7e-10 69.7 215 29.8
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 8.3e-10 68.6 186 26.3
arahy.Tifrunner.gnm1.ann1.M8N6J9 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.4e-09 67.8 181 26.0
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 1.4e-09 67.8 197 24.4
Glyma.18G110601 Glycine max HOM05D000876 ORTHO05D000285 1.9e-09 67.4 185 27.6
SGA_v2.0_scaffold136G35048 Striga asiatica HOM05D045704 ORTHO05D000285 1.9e-09 67.4 201 27.4
Hund29878 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.4e-09 67.0 153 35.9
Hund29879 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.4e-09 67.0 153 35.9
Actinidia09792 Actinidia chinensis HOM05D000876 ORTHO05D011747 3.2e-09 66.6 111 40.5
Aqoxy4G02707 Aquilegia oxysepala HOM05D000876 ORTHO05D000285 3.2e-09 66.6 209 28.2
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 3.2e-09 66.6 213 29.6
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 3.2e-09 66.6 191 25.1
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 4.1e-09 66.2 213 29.1
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 7.0e-09 65.5 196 28.1
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 9.2e-09 65.1 186 24.7
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 1.2e-08 64.7 185 26.5
CANSAT78G0895 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-08 64.3 213 29.1
Hund26464 Selenicereus undatus HOM05D000876 ORTHO05D002662 1.6e-08 64.3 144 34.7
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 2.1e-08 63.9 206 27.7
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 2.7e-08 63.5 183 28.4
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 2.7e-08 63.5 183 28.4
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 2.7e-08 63.5 183 28.4
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 3.5e-08 63.2 217 27.2
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 4.6e-08 62.8 189 27.0
RcHm_v2.0_Chr2g0103961 Rosa chinensis HOM05D000876 ORTHO05D000285 4.6e-08 62.8 97 35.1
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 6.0e-08 62.4 220 27.7
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 7.8e-08 62.0 213 29.1
CANSAT21G2246 Cannabis sativa HOM05D000876 ORTHO05D000285 7.8e-08 62.0 213 28.2
RcHm_v2.0_Chr2g0128681 Rosa chinensis HOM05D000876 ORTHO05D000285 7.8e-08 62.0 128 32.8
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-07 61.6 212 27.8
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-07 61.6 212 27.8
Actinidia36308 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.3e-07 61.2 183 27.9
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 1.3e-07 61.2 219 26.9
RcHm_v2.0_Chr6g0254701 Rosa chinensis HOM05D000876 ORTHO05D000285 1.3e-07 61.2 100 33.0
CANSAT35G1570 Cannabis sativa HOM05D000876 ORTHO05D000285 1.7e-07 60.8 193 25.9
Prupe.8G016500 Prunus persica HOM05D000876 ORTHO05D000285 1.7e-07 60.8 203 27.6
arahy.Tifrunner.gnm1.ann1.01IP25 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.3e-07 60.5 174 24.7
Atru.chr5.3371 Acer truncatum HOM05D000876 ORTHO05D000285 6.6e-07 58.9 107 34.6
arahy.Tifrunner.gnm1.ann1.41KYN2 Arachis hypogaea HOM05D000876 ORTHO05D000285 6.6e-07 58.9 59 42.4
SHI10897 Sapria himalayana HOM05D007516 ORTHO05D000285 8.6e-07 58.5 199 24.6
SHI38234 Sapria himalayana HOM05D007516 ORTHO05D000285 8.6e-07 58.5 199 24.6
SHI03289 Sapria himalayana HOM05D007516 ORTHO05D000285 1.1e-06 58.2 199 24.6
FAN05G3178 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-06 57.8 216 25.9
arahy.Tifrunner.gnm1.ann1.UKR2WH Arachis hypogaea HOM05D000034 ORTHO05D000037 1.9e-06 57.4 118 28.8
CSS0048670 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 2.5e-06 57.0 189 25.9
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.5e-06 57.0 185 28.6
Hund24071 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.5e-06 57.0 110 34.5
Sc20g0002990 Simmondsia chinensis HOM05D018396 ORTHO05D018884 2.5e-06 57.0 256 25.4
CSS0001395 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 3.3e-06 56.6 178 28.1
CSS0010034 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.3e-06 56.6 191 25.7
CANSAT35G0018 Cannabis sativa HOM05D000876 ORTHO05D000285 4.3e-06 56.2 179 26.3
Actinidia40454 Actinidia chinensis HOM05D000876 ORTHO05D000285 5.6e-06 55.8 93 30.1
Oeu060831.2 Olea europaea HOM05D000876 ORTHO05D000285 5.6e-06 55.8 63 44.4
Os12g0207200 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 5.6e-06 55.8 215 27.0
FAN19G2459 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.3e-06 55.5 188 27.7
SHI43640 Sapria himalayana HOM05D007516 ORTHO05D000285 7.3e-06 55.5 199 24.1
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 9.5e-06 55.1 186 22.0
FAN21G1280 Fragaria x ananassa HOM05D000876 ORTHO05D000285 9.5e-06 55.1 126 27.8


User provided reference genes

Program Settings