Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 6.6e-134 480.7 243 100.0
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 8.2e-68 261.2 176 77.3
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.8e-67 260.0 176 76.7
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 2.0e-66 256.5 176 75.0
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 2.7e-47 193.0 172 61.0
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 6.3e-44 181.8 169 56.8
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 1.4e-43 180.6 168 56.0
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 1.6e-42 177.2 168 57.7
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 2.0e-42 176.8 168 55.4
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 5.9e-42 175.3 171 55.0
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.7e-41 173.7 176 55.1
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.2e-41 173.3 168 54.2
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 2.9e-41 172.9 171 55.0
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.5e-41 171.8 168 54.2
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.5e-40 170.6 174 54.6
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.5e-40 169.9 168 53.6
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.5e-40 169.9 168 54.8
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 3.2e-40 169.5 169 55.0
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.2e-40 169.1 168 54.8
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 4.2e-40 169.1 174 54.6
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.6e-39 167.2 200 47.0
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 4.7e-39 165.6 178 48.9
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 8.0e-39 164.9 168 54.2
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 1.0e-38 164.5 173 50.3
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 3.0e-38 162.9 168 53.6
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 3.0e-38 162.9 168 52.4
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 3.0e-38 162.9 167 52.7
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 4.0e-38 162.5 166 54.2
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 4.0e-38 162.5 166 51.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 4.0e-38 162.5 168 51.8
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 5.2e-38 162.2 168 52.4
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 6.8e-38 161.8 168 51.2
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 6.8e-38 161.8 168 52.4
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 8.8e-38 161.4 169 53.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.2e-37 161.0 169 52.7
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 2.0e-37 160.2 169 52.1
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.0e-37 160.2 169 52.7
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.6e-37 159.8 169 52.1
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 3.4e-37 159.5 169 52.7
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.4e-37 159.5 169 52.7
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.4e-37 159.1 175 48.6
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 5.7e-37 158.7 168 51.8
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 9.7e-37 157.9 173 48.0
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.3e-36 157.5 177 49.2
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 1.7e-36 157.1 169 51.5
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 4.8e-36 155.6 174 51.1
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 6.3e-36 155.2 168 51.8
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 8.3e-36 154.8 173 48.6
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.4e-35 154.1 175 47.4
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 1.4e-35 154.1 169 48.5
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.4e-35 154.1 168 51.2
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.8e-35 153.7 175 48.6
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 3.1e-35 152.9 175 51.4
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 9.1e-35 151.4 165 51.5
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 9.1e-35 151.4 172 46.5
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 2.0e-34 150.2 173 47.4
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.0e-34 150.2 173 48.0
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 2.0e-34 150.2 173 48.6
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 2.7e-34 149.8 173 47.4
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.5e-34 149.4 175 45.7
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 3.5e-34 149.4 168 51.2
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 1.3e-33 147.5 169 47.9
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 1.7e-33 147.1 168 50.0
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 2.9e-33 146.4 169 50.9
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 2.9e-33 146.4 169 49.7
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 5.0e-33 145.6 169 49.1
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.5e-32 144.1 168 48.8
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.2e-32 142.5 172 45.9
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.2e-32 142.5 172 45.9
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 1.6e-31 140.6 166 48.2
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 1.6e-31 140.6 169 46.7
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.7e-31 139.8 165 49.1
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 2.7e-31 139.8 165 49.1
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 8.0e-31 138.3 169 46.7
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 1.4e-30 137.5 174 47.7
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.4e-30 137.5 171 48.0
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.4e-30 137.5 172 44.2
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 6.8e-30 135.2 175 46.9
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.2e-29 134.4 169 49.7
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.2e-29 134.4 173 44.5
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 2.0e-29 133.7 165 46.1
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 5.7e-29 132.1 166 48.8
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.3e-28 131.0 166 46.4
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.3e-28 131.0 169 45.6
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.2e-28 130.2 166 47.6
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 2.8e-28 129.8 165 44.8
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 4.8e-28 129.0 168 44.6
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 4.8e-28 129.0 165 44.8
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 4.8e-28 129.0 165 44.8
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 4.8e-28 129.0 169 46.2
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 6.3e-28 128.6 170 48.2
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 6.3e-28 128.6 167 44.9
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 6.3e-28 128.6 185 45.9
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 8.3e-28 128.3 167 43.7
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.1e-27 127.9 167 46.1
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.1e-27 127.9 166 45.2
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.4e-27 127.5 172 42.4
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 1.4e-27 127.5 169 45.0
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 2.4e-27 126.7 166 45.8
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 3.1e-27 126.3 171 46.2
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 4.1e-27 125.9 165 43.0
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 7.0e-27 125.2 166 47.0
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.2e-26 124.4 165 43.0
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 2.0e-26 123.6 166 47.6
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.7e-26 123.2 166 46.4
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 3.5e-26 122.9 169 45.6
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 3.5e-26 122.9 166 44.6
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 4.5e-26 122.5 164 44.5
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.0e-25 121.3 168 42.3
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 8.6e-25 118.2 165 44.2
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 8.6e-25 118.2 165 44.2
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.9e-24 117.1 108 52.8
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 3.3e-24 116.3 171 43.9
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 4.2e-24 115.9 165 44.2
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 4.2e-24 115.9 165 42.4
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 4.2e-24 115.9 165 44.2
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 4.2e-24 115.9 165 44.2
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 4.2e-24 115.9 165 42.4
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 7.2e-24 115.2 149 43.6
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 1.2e-23 114.4 167 43.1
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.8e-23 113.2 109 50.5
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.1e-23 112.1 176 41.5
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 2.3e-22 110.2 171 42.7
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.8e-22 108.6 176 40.9
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 2.0e-21 107.1 164 42.7
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 2.2e-20 103.6 170 43.5
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 6.3e-20 102.1 178 42.1
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 5.4e-19 99.0 109 50.5
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 2.1e-15 87.0 173 35.3
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.9e-11 73.9 181 29.3
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 1.8e-06 57.4 86 36.0


User provided reference genes

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