Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g012200 Amaranthus hybridus HOM05D000735 ORTHO05D004669 3.5e-39 164.5 81 100.0
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 3.3e-21 104.8 61 90.2
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 4.3e-21 104.4 64 82.8
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 2.8e-20 101.7 58 91.4
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 4.7e-20 100.9 56 92.9
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 4.7e-20 100.9 65 83.1
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 4.7e-20 100.9 65 83.1
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 1.1e-19 99.8 55 89.1
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 1.1e-19 99.8 55 92.7
SalBow8G2387 Salvia bowleyana HOM05D000735 ORTHO05D004669 1.1e-19 99.8 55 92.7
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 1.1e-19 99.8 55 92.7
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 1.8e-19 99.0 64 78.1
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 1.8e-19 99.0 64 78.1
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 1.8e-19 99.0 64 78.1
Ciclev10024040m.g Citrus clementina HOM05D000735 ORTHO05D004669 4.0e-19 97.8 58 89.7
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 4.0e-19 97.8 63 79.4
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 5.2e-19 97.4 63 82.5
Sc25g0001890 Simmondsia chinensis HOM05D000735 ORTHO05D004669 5.2e-19 97.4 57 87.7
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 5.2e-19 97.4 55 90.9
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 6.8e-19 97.1 63 82.5
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 6.8e-19 97.1 55 89.1
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 6.8e-19 97.1 65 81.5
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 8.9e-19 96.7 55 89.1
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 8.9e-19 96.7 67 80.6
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 8.9e-19 96.7 64 76.6
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.2e-18 96.3 56 92.9
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.2e-18 96.3 60 83.3
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 1.2e-18 96.3 67 77.6
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 2.0e-18 95.5 56 91.1
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 2.0e-18 95.5 57 89.5
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 2.6e-18 95.1 56 91.1
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 2.6e-18 95.1 58 84.5
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 2.6e-18 95.1 55 87.3
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 2.6e-18 95.1 64 84.4
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 2.6e-18 95.1 59 83.1
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.4e-18 94.7 55 90.9
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 3.4e-18 94.7 55 90.9
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 4.4e-18 94.4 55 87.3
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 5.8e-18 94.0 55 85.5
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 5.8e-18 94.0 64 79.7
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 5.8e-18 94.0 56 89.3
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 7.5e-18 93.6 63 76.2
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 9.8e-18 93.2 55 89.1
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 1.3e-17 92.8 61 78.7
HanXRQChr14g0455051 Helianthus annuus HOM05D000735 ORTHO05D004669 1.7e-17 92.4 56 85.7
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 1.7e-17 92.4 56 85.7
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 2.2e-17 92.0 55 87.3
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 2.2e-17 92.0 56 87.5
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 2.9e-17 91.7 55 87.3
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 2.9e-17 91.7 59 83.1
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.7e-17 91.3 55 87.3
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 4.9e-17 90.9 55 87.3
Ciclev10026680m.g Citrus clementina HOM05D000735 ORTHO05D004669 6.4e-17 90.5 63 73.0
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 8.3e-17 90.1 59 76.3
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 1.1e-16 89.7 56 83.9
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 1.9e-16 89.0 55 83.6
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.9e-16 89.0 55 81.8
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 1.9e-16 89.0 48 91.7
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 2.4e-16 88.6 48 91.7
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 2.4e-16 88.6 48 91.7
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 2.4e-16 88.6 48 91.7
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 2.4e-16 88.6 58 86.2
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 3.2e-16 88.2 57 84.2
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 7.0e-16 87.0 55 81.8
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 7.0e-16 87.0 60 76.7
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 9.2e-16 86.7 55 81.8
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 9.2e-16 86.7 55 81.8
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.2e-15 86.3 55 83.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.6e-15 85.9 57 82.5
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 1.6e-15 85.9 57 82.5
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 1.6e-15 85.9 55 81.8
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.6e-15 85.9 55 81.8
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 2.0e-15 85.5 64 75.0
Ciclev10013365m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.7e-15 85.1 56 82.1
Ciclev10033106m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.7e-15 85.1 56 82.1
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 2.7e-15 85.1 55 81.8
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 3.5e-15 84.7 56 82.1
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
BcaB02g07228 Brassica carinata HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 4.6e-15 84.3 57 84.2
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 4.6e-15 84.3 57 84.2
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 4.6e-15 84.3 57 84.2
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 4.6e-15 84.3 57 84.2
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 4.6e-15 84.3 57 84.2
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 6.0e-15 84.0 55 80.0
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 1.0e-14 83.2 44 95.5
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 1.0e-14 83.2 44 95.5
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.3e-14 82.8 50 84.0
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 1.3e-14 82.8 50 84.0
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 1.7e-14 82.4 44 93.2
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 2.3e-14 82.0 57 82.5
Lalb_Chr20g0119801 Lupinus albus HOM05D000735 ORTHO05D004669 2.3e-14 82.0 59 78.0
TPR.G10511 Trifolium pratense HOM05D000735 ORTHO05D004669 2.3e-14 82.0 56 80.4
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 3.0e-14 81.6 44 95.5
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 3.0e-14 81.6 57 80.7
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 5.0e-14 80.9 65 69.2
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 5.0e-14 80.9 56 80.4
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 6.6e-14 80.5 57 75.4
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 6.6e-14 80.5 42 97.6
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 1.5e-13 79.3 57 77.2
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 1.5e-13 79.3 57 77.2
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 2.5e-13 78.6 44 88.6
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 2.5e-13 78.6 44 88.6
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 2.5e-13 78.6 44 88.6
Lalb_Chr18g0057611 Lupinus albus HOM05D000735 ORTHO05D004669 3.3e-13 78.2 59 76.3
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 7.3e-13 77.0 41 95.1
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 7.3e-13 77.0 52 75.0
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 2.8e-12 75.1 48 81.2
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 1.1e-11 73.2 39 94.9
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 1.1e-11 73.2 39 94.9
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.4e-11 72.8 66 60.6
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 1.5e-10 69.3 45 77.8
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 1.5e-10 69.3 45 77.8
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 4.4e-10 67.8 45 75.6
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 8.3e-09 63.5 44 70.5
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.9e-08 62.4 69 56.5
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.9e-08 62.4 59 59.3


User provided reference genes

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