Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g011770 Amaranthus hybridus HOM05D000230 ORTHO05D010859 1.1e-44 183.0 91 100.0
AUR62003558 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.3e-13 77.4 40 90.0
Ah.02g121440 Amaranthus hybridus HOM05D000230 ORTHO05D000176 1.4e-12 76.3 40 87.5
EL10Ac6g15312 Beta vulgaris HOM05D000230 ORTHO05D000176 2.6e-11 72.0 40 82.5
Lj4g0022892 Lotus japonicus HOM05D000230 ORTHO05D000176 8.5e-10 67.0 42 69.0
TAR628G0760 Trochodendron aralioides HOM05D000230 ORTHO05D000176 1.1e-09 66.6 42 71.4
CAN.G652.13 Capsicum annuum HOM05D000230 ORTHO05D000176 1.4e-09 66.2 40 72.5
Nitab4.5_0010049g0010 Nicotiana tabacum HOM05D000230 ORTHO05D000176 1.4e-09 66.2 40 72.5
Peaxi162Scf00183g00421 Petunia axillaris HOM05D000230 ORTHO05D000176 1.4e-09 66.2 40 72.5
Psat7g046280 Pisum sativum HOM05D000230 ORTHO05D000176 1.4e-09 66.2 42 66.7
Prupe.4G271000 Prunus persica HOM05D000230 ORTHO05D000176 1.4e-09 66.2 42 73.8
PSO339G5013 Papaver somniferum HOM05D000230 ORTHO05D000176 1.9e-09 65.9 40 72.5
PSO541G0109 Papaver somniferum HOM05D000230 ORTHO05D000176 1.9e-09 65.9 42 69.0
PSO675G2931 Papaver somniferum HOM05D000230 ORTHO05D000176 1.9e-09 65.9 42 69.0
unitig_0.g14 Utricularia gibba HOM05D000230 ORTHO05D000176 1.9e-09 65.9 40 72.5
VMungo0251G2149 Vigna mungo HOM05D000230 ORTHO05D000176 1.9e-09 65.9 40 72.5
MELO3C023241.2 Cucumis melo HOM05D000230 ORTHO05D000176 2.5e-09 65.5 41 68.3
Dinv24353 Davidia involucrata HOM05D000230 ORTHO05D000176 2.5e-09 65.5 40 72.5
Medtr8g093630 Medicago truncatula HOM05D000230 ORTHO05D000176 2.5e-09 65.5 45 64.4
Solyc11g005980.3 Solanum lycopersicum HOM05D000230 ORTHO05D000176 2.5e-09 65.5 53 58.5
Sopen11g001920 Solanum pennellii HOM05D000230 ORTHO05D000176 2.5e-09 65.5 53 58.5
Cc07_g18440 Coffea canephora HOM05D000230 ORTHO05D000176 3.2e-09 65.1 40 70.0
Hma1.2p1_0476F.1_g160885 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 3.2e-09 65.1 40 72.5
Rhsim10G0135300 Rhododendron simsii HOM05D000230 ORTHO05D000176 3.2e-09 65.1 40 70.0
SGA_v2.0_scaffold370G50126 Striga asiatica HOM05D000230 ORTHO05D000176 3.2e-09 65.1 40 72.5
Migut.H00724 Erythranthe guttata HOM05D000230 ORTHO05D000176 4.2e-09 64.7 40 72.5
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 4.2e-09 64.7 39 69.2
Lj4C844G3 Lonicera japonica HOM05D000230 ORTHO05D000176 4.2e-09 64.7 39 71.8
Nitab4.5_0000856g0120 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.2e-09 64.7 40 70.0
Sc03g0006030 Simmondsia chinensis HOM05D000230 ORTHO05D000176 4.2e-09 64.7 40 72.5
SGA_v2.0_scaffold289G47260 Striga asiatica HOM05D000230 ORTHO05D000176 4.2e-09 64.7 40 72.5
TAR381G0447 Trochodendron aralioides HOM05D000230 ORTHO05D000176 4.2e-09 64.7 42 69.0
CSS0021510 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 5.5e-09 64.3 40 67.5
Lj1g0014162 Lotus japonicus HOM05D000230 ORTHO05D000176 5.5e-09 64.3 40 70.0
Lalb_Chr07g0184441 Lupinus albus HOM05D000230 ORTHO05D000176 5.5e-09 64.3 40 72.5
RcHm_v2.0_Chr2g0120781 Rosa chinensis HOM05D000230 ORTHO05D000176 5.5e-09 64.3 40 70.0
TWI79G1186 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 5.5e-09 64.3 40 70.0
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 7.2e-09 63.9 40 67.5
Glyma.05G191600 Glycine max HOM05D000230 ORTHO05D000176 7.2e-09 63.9 42 64.3
Aa31LG8G12320 Aethionema arabicum HOM05D000230 ORTHO05D000176 9.4e-09 63.5 40 70.0
Cpa.g.sc42.151 Carica papaya HOM05D000230 ORTHO05D000176 9.4e-09 63.5 40 70.0
CsaV3_2G018300 Cucumis sativus L. HOM05D000230 ORTHO05D000176 9.4e-09 63.5 40 67.5
PGR119G1551 Punica granatum HOM05D000230 ORTHO05D000176 9.4e-09 63.5 40 70.0
GSVIVG01026489001 Vitis vinifera HOM05D000230 ORTHO05D000176 9.4e-09 63.5 53 58.5
AT2G13680 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 70.0
Carub.0003s2817 Capsella rubella HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 70.0
CARHR104750 Cardamine hirsuta HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 70.0
Ca_17639_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 67.5
ClCG02G000530 Citrullus lanatus HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 67.5
Thhalv10022518m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 70.0
Potri.005G058300 Populus trichocarpa HOM05D000230 ORTHO05D000176 1.2e-08 63.2 42 64.3
Sabra05G0050100 Salix brachista HOM05D000230 ORTHO05D000176 1.2e-08 63.2 42 64.3
Sp3g27070 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 70.0
Sed0007581 Sechium edule HOM05D000230 ORTHO05D000176 1.2e-08 63.2 41 65.9
Hund04407 Selenicereus undatus HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 67.5
vmacro12807 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 1.2e-08 63.2 40 67.5
Actinidia06625 Actinidia chinensis HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 67.5
Duzib187G0485 Durio zibethinus HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 70.0
ECA234G3310 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.6e-08 62.8 39 66.7
Glyma.08G156800 Glycine max HOM05D000230 ORTHO05D000176 1.6e-08 62.8 42 61.9
Gohir.A10G156400 Gossypium hirsutum HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 70.0
Gorai.011G119900 Gossypium raimondii HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 70.0
MD01G1004000 Malus domestica HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 72.5
Oeu050136.1 Olea europaea HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 70.0
QL06p028617 Quercus lobata HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 70.0
Thecc.01G131200 Theobroma cacao HOM05D000230 ORTHO05D000176 1.6e-08 62.8 42 64.3
vmacro18666 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 1.6e-08 62.8 40 67.5
Aqoxy2G01644 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 2.1e-08 62.4 42 61.9
Cfa002887 Carpinus fangiana HOM05D000230 ORTHO05D000176 2.1e-08 62.4 40 70.0
Haze_25227 Corylus avellana HOM05D000230 ORTHO05D000176 2.1e-08 62.4 40 70.0
Gohir.D10G109300 Gossypium hirsutum HOM05D000230 ORTHO05D000176 2.1e-08 62.4 40 67.5
HanXRQChr09g0258671 Helianthus annuus HOM05D000230 ORTHO05D000176 2.1e-08 62.4 37 73.0
Oeu004247.1 Olea europaea HOM05D000230 ORTHO05D000176 2.1e-08 62.4 40 70.0
TPR.G37312 Trifolium pratense HOM05D000230 ORTHO05D010859 2.1e-08 62.4 42 64.3
BcaB02g11528 Brassica carinata HOM05D000230 ORTHO05D000176 2.7e-08 62.0 40 67.5
Ca_16943_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 2.7e-08 62.0 39 64.1
Ca_16962_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 2.7e-08 62.0 39 64.1
FvH4_1g24300 Fragaria vesca HOM05D000230 ORTHO05D000176 2.7e-08 62.0 42 64.3
FAN23G0965 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.7e-08 62.0 42 64.3
FAN23G2391 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.7e-08 62.0 42 64.3
FAN26G0885 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.7e-08 62.0 42 64.3
FAN28G0249 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.7e-08 62.0 42 64.3
Glyma.04G213100 Glycine max HOM05D000230 ORTHO05D000176 2.7e-08 62.0 40 67.5
Manes.12G155300 Manihot esculenta HOM05D000230 ORTHO05D000176 2.7e-08 62.0 42 64.3
SalBow1G4131 Salvia bowleyana HOM05D000230 ORTHO05D000176 2.7e-08 62.0 40 70.0
THA.LOC104807157 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 2.7e-08 62.0 40 67.5
VMungo1309G2269 Vigna mungo HOM05D000230 ORTHO05D000176 2.7e-08 62.0 41 65.9
AL3G45540 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 3.6e-08 61.6 40 67.5
CANSAT01G0637 Cannabis sativa HOM05D000230 ORTHO05D000176 3.6e-08 61.6 42 61.9
COL.COLO4_35732 Corchorus olitorius HOM05D000230 ORTHO05D000176 3.6e-08 61.6 40 67.5
Lalb_Chr23g0272591 Lupinus albus HOM05D000230 ORTHO05D000176 3.6e-08 61.6 40 67.5
MD02G1211500 Malus domestica HOM05D000230 ORTHO05D000176 3.6e-08 61.6 40 72.5
Medtr3g096200 Medicago truncatula HOM05D000230 ORTHO05D000176 4.7e-08 61.2 40 65.0
TPR.G8157 Trifolium pratense HOM05D000230 ORTHO05D000176 4.7e-08 61.2 40 67.5
Ciclev10000018m.g Citrus clementina HOM05D000230 ORTHO05D000176 6.1e-08 60.8 38 68.4
MELO3C023251.2 Cucumis melo HOM05D000230 ORTHO05D000176 6.1e-08 60.8 40 65.0
CsaV3_2G018230 Cucumis sativus L. HOM05D000230 ORTHO05D000176 6.1e-08 60.8 40 65.0
Eucgr.I00208 Eucalyptus grandis HOM05D000230 ORTHO05D000176 6.1e-08 60.8 40 67.5
Glyma.13G157600 Glycine max HOM05D000230 ORTHO05D010859 6.1e-08 60.8 42 59.5
SGA_v2.0_scaffold41G15755 Striga asiatica HOM05D000230 ORTHO05D000176 6.1e-08 60.8 38 71.1
arahy.Tifrunner.gnm1.ann1.JS5KS9 Arachis hypogaea HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 65.0
arahy.Tifrunner.gnm1.ann1.V659E7 Arachis hypogaea HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 65.0
BcaC04g23077 Brassica carinata HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 65.0
A09p10430 Brassica napus HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 67.5
C09p12370 Brassica napus HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 65.0
BolC9t54131H Brassica oleracea HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 65.0
BraA09t36689Z Brassica rapa HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 67.5
Os06g0182300 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 7.9e-08 60.5 40 70.0
HPP92_010433 Vanilla planifolia HOM05D000230 ORTHO05D000176 7.9e-08 60.5 39 74.4
CiPaw.03G122400 Carya illinoinensis HOM05D000230 ORTHO05D000176 1.0e-07 60.1 40 65.0
Hund12766 Selenicereus undatus HOM05D000230 ORTHO05D000176 1.0e-07 60.1 40 60.0
C02p22230 Brassica napus HOM05D000072 ORTHO05D010859 1.8e-07 59.3 46 58.7
C02p59710 Brassica napus HOM05D000230 ORTHO05D010859 1.8e-07 59.3 46 58.7
C05p24630 Brassica napus HOM05D000230 ORTHO05D010859 1.8e-07 59.3 46 58.7
BolC2t08363H Brassica oleracea HOM05D000230 ORTHO05D010859 1.8e-07 59.3 46 58.7
PSO135G0764 Papaver somniferum HOM05D000230 ORTHO05D000176 1.8e-07 59.3 38 68.4
arahy.Tifrunner.gnm1.ann1.4YM5KJ Arachis hypogaea HOM05D000230 ORTHO05D000176 2.3e-07 58.9 40 67.5
Migut.L00886 Erythranthe guttata HOM05D000230 ORTHO05D000176 2.3e-07 58.9 40 65.0
Aqoxy7G03480 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 3.0e-07 58.5 37 67.6
BolC9t54825H Brassica oleracea HOM05D000230 ORTHO05D010859 3.0e-07 58.5 46 58.7
arahy.Tifrunner.gnm1.ann1.DN5312 Arachis hypogaea HOM05D000230 ORTHO05D000176 3.9e-07 58.2 40 67.5
Psat5g062520 Pisum sativum HOM05D000230 ORTHO05D000176 3.9e-07 58.2 40 62.5
ATR0184G033 Amborella trichopoda HOM05D000230 ORTHO05D000176 5.1e-07 57.8 38 65.8
Gohir.A10G156100 Gossypium hirsutum HOM05D000230 ORTHO05D000176 6.7e-07 57.4 40 65.0
Gorai.011G120300 Gossypium raimondii HOM05D000230 ORTHO05D000176 6.7e-07 57.4 40 65.0
arahy.Tifrunner.gnm1.ann1.B771QR Arachis hypogaea HOM05D000230 ORTHO05D000176 8.8e-07 57.0 39 64.1
arahy.Tifrunner.gnm1.ann1.YYM7FJ Arachis hypogaea HOM05D000230 ORTHO05D000176 8.8e-07 57.0 39 64.1
Lalb_Chr11g0068401 Lupinus albus HOM05D000230 ORTHO05D000176 1.1e-06 56.6 39 66.7
SHI11473 Sapria himalayana HOM05D000230 ORTHO05D000176 1.5e-06 56.2 37 64.9
BcaC08g44525 Brassica carinata HOM05D017572 ORTHO05D010859 2.0e-06 55.8 46 56.5
C06p19780 Brassica napus HOM05D000230 ORTHO05D010859 2.0e-06 55.8 46 56.5
DCAR_010255 Daucus carota HOM05D000230 ORTHO05D000176 2.6e-06 55.5 37 64.9
SEGI_06678 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 4.4e-06 54.7 37 67.6
SEGI_26030 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 4.4e-06 54.7 36 66.7
Sp6g30970 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.7e-06 54.3 36 69.4
DCAR_014339 Daucus carota HOM05D000230 ORTHO05D000176 9.7e-06 53.5 40 60.0
Migut.B01398 Erythranthe guttata HOM05D000230 ORTHO05D000176 9.7e-06 53.5 39 64.1
Mapoly0183s0015 Marchantia polymorpha HOM05D000230 ORTHO05D000176 9.7e-06 53.5 36 66.7


User provided reference genes

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