Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.3e-232 808.5 403 100.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.5e-170 602.4 523 64.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.0e-168 597.0 522 63.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.0e-168 597.0 522 63.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.0e-168 597.0 522 63.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.0e-168 597.0 522 63.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.0e-168 597.0 522 63.8
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.4e-168 596.7 522 63.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.7e-164 582.4 527 62.6
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-163 578.6 522 62.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 4.2e-162 575.1 522 62.1
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.2e-162 575.1 522 62.3
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 6.1e-161 571.2 533 61.2
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 2.3e-160 569.3 522 62.1
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 4.0e-160 568.5 522 61.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 6.3e-158 561.2 498 63.9
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 8.3e-158 560.8 560 58.4
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.4e-157 559.3 522 61.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.4e-157 559.3 522 61.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 3.5e-156 555.4 522 61.3
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.8e-155 552.0 522 60.9
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.8e-155 552.0 522 60.9
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 9.5e-154 547.4 485 63.3
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-153 545.0 522 60.3
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.0e-153 544.3 497 62.6
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 4.9e-150 535.0 495 61.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.4e-149 532.7 529 58.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.7e-147 526.6 495 60.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.7e-147 526.6 495 60.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.7e-147 526.6 495 60.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-146 523.5 495 60.6
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.1e-141 507.3 494 59.1
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 2.4e-141 506.1 464 62.3
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.6e-137 493.4 484 59.7
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 4.7e-137 491.9 478 59.8
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.1e-137 491.1 281 89.3
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.4e-136 490.3 479 59.9
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.3e-136 489.6 295 85.8
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 9.8e-135 484.2 431 64.0
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.3e-134 483.8 280 87.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.9e-133 479.9 539 53.6
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.4e-133 479.6 295 84.7
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 6.6e-131 471.5 280 86.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.5e-130 470.3 463 59.2
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.1e-129 464.5 522 53.1
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 4.9e-126 455.3 258 89.5
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 6.4e-126 454.9 280 83.6
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.1e-124 449.9 280 83.6
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 3.6e-121 439.1 258 87.6
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 8.4e-118 427.9 410 60.2
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 8.4e-118 427.9 410 60.2
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.3e-115 419.9 251 86.5
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.9e-115 419.1 258 83.3
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 5.1e-115 418.7 250 85.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-113 414.1 251 84.5
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.3e-112 408.7 263 81.0
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 2.9e-110 402.9 250 82.8
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 9.3e-109 397.9 250 82.4
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.6e-108 397.1 274 76.3
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.6e-108 397.1 274 76.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-99 367.5 281 71.9
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 5.3e-96 355.5 326 64.4
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 6.9e-96 355.1 521 45.1
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.6e-92 344.0 258 72.5
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 4.6e-92 342.4 235 77.4
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.4e-88 330.1 243 73.3
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.2e-85 319.7 250 70.0
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-80 304.3 175 85.1
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.1e-76 290.4 241 63.9
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 2.7e-76 290.0 185 79.5
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.8e-75 285.0 326 53.4
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-74 283.9 185 78.9
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-74 283.9 185 78.9
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-74 283.9 185 78.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 5.9e-71 272.3 348 50.6
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 7.7e-71 271.9 185 76.2
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 4.4e-66 256.1 210 68.6
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 8.5e-62 241.9 126 97.6
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.5e-61 240.4 200 67.0
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.5e-61 240.4 200 67.0
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 3.2e-61 240.0 235 60.4
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.2e-59 232.6 281 53.0
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-57 227.6 161 73.3
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 9.1e-56 221.9 148 79.7
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-54 217.2 176 69.9
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-51 208.4 158 68.4
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.4e-51 208.0 118 89.8
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.2e-51 206.1 296 49.0
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 4.5e-47 193.0 279 39.4
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.9e-46 190.3 92 95.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 3.8e-46 189.9 379 35.6
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 8.0e-44 182.2 91 93.4
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 1.4e-43 181.4 102 89.2
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 2.3e-43 180.6 87 94.3
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 4.0e-43 179.9 90 93.3
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 8.9e-43 178.7 102 88.2
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.2e-42 178.3 102 88.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 3.4e-42 176.8 101 87.1
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 7.5e-42 175.6 175 57.1
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 6.3e-41 172.6 102 86.3
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 6.3e-41 172.6 102 86.3
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-40 171.0 221 51.1
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 4.5e-39 166.4 85 91.8
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-38 165.2 94 89.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 8.6e-38 162.2 87 94.3
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.1e-37 161.8 134 60.4
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.5e-37 161.4 91 83.5
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.6e-36 156.8 86 93.0
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 4.4e-34 149.8 87 80.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 7.5e-34 149.1 94 81.9
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-32 145.2 90 81.1
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 1.8e-32 144.4 91 83.5
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.1e-32 143.3 98 72.4
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.2e-31 141.7 196 45.4
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.3e-30 137.5 104 71.2
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.0e-30 136.3 93 76.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 6.2e-28 129.4 90 75.6
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.1e-27 128.6 197 47.2
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-27 127.9 160 55.0
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 2.1e-23 114.4 203 42.4
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 2.7e-23 114.0 109 58.7
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 6.0e-23 112.8 54 98.1
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 4.3e-21 106.7 57 94.7
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.8e-20 104.0 68 79.4
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 8.1e-20 102.4 53 86.8
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 5.2e-19 99.8 86 65.1
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 2.6e-18 97.4 68 76.5
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.2e-17 94.4 47 95.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.9e-17 94.0 75 62.7
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 4.9e-17 93.2 69 73.9
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 7.1e-16 89.4 44 93.2
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 3.5e-15 87.0 66 69.7
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 1.7e-14 84.7 48 85.4
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 3.9e-14 83.6 50 80.0
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 6.6e-14 82.8 47 89.4
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.1e-13 82.0 41 95.1
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.3e-13 80.1 43 88.4
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-12 78.2 56 69.6
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.1e-11 75.5 52 73.1
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 8.9e-11 72.4 45 88.9
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 7.6e-10 69.3 41 87.8
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 9.9e-10 68.9 34 94.1
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 9.9e-10 68.9 33 93.9
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 1.1e-08 65.5 63 60.3
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 4.6e-07 60.1 36 80.6


User provided reference genes

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