Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g010880 Amaranthus hybridus HOM05D006867 ORTHO05D008676 0.0e+00 1246.9 633 100.0
EL10Ac9g22256 Beta vulgaris HOM05D006867 ORTHO05D008676 1.0e-271 939.9 633 76.5
AUR62039056 Chenopodium quinoa HOM05D006867 ORTHO05D008676 5.7e-254 880.9 630 72.2
AUR62010330 Chenopodium quinoa HOM05D006867 ORTHO05D008676 3.7e-253 878.2 631 72.4
Hund00158 Selenicereus undatus HOM05D006867 ORTHO05D008676 2.2e-237 825.9 635 69.0
Sc08g0001320 Simmondsia chinensis HOM05D006867 ORTHO05D008676 5.0e-218 761.5 633 65.1
Actinidia08011 Actinidia chinensis HOM05D006867 ORTHO05D008676 8.6e-202 707.6 647 59.7
Dinv32661 Davidia involucrata HOM05D006867 ORTHO05D008676 3.6e-200 702.2 659 58.1
COL.COLO4_23081 Corchorus olitorius HOM05D006867 ORTHO05D008676 8.1e-200 701.0 635 58.4
GSVIVG01027485001 Vitis vinifera HOM05D006867 ORTHO05D008676 1.4e-199 700.3 583 63.1
QL08p048171 Quercus lobata HOM05D006867 ORTHO05D008676 3.1e-199 699.1 640 58.6
Manes.01G237400 Manihot esculenta HOM05D006867 ORTHO05D008676 3.4e-198 695.7 638 59.2
Ciclev10019260m.g Citrus clementina HOM05D006867 ORTHO05D008676 7.5e-198 694.5 650 58.0
Cc00_g15760 Coffea canephora HOM05D006867 ORTHO05D008676 3.7e-197 692.2 642 57.6
TAR629G2918 Trochodendron aralioides HOM05D006867 ORTHO05D008676 6.4e-197 691.4 644 58.4
Thecc.01G329400 Theobroma cacao HOM05D006867 ORTHO05D008676 1.9e-196 689.9 637 58.4
Gohir.D12G122200 Gossypium hirsutum HOM05D006867 ORTHO05D008676 1.7e-194 683.3 629 58.0
Gohir.A12G118400 Gossypium hirsutum HOM05D006867 ORTHO05D008676 3.0e-194 682.6 629 58.2
Gorai.008G133000 Gossypium raimondii HOM05D006867 ORTHO05D008676 8.6e-194 681.0 629 58.0
Lj9A610G56 Lonicera japonica HOM05D006867 ORTHO05D008676 3.3e-193 679.1 647 58.6
Potri.002G183500 Populus trichocarpa HOM05D006867 ORTHO05D008676 3.3e-193 679.1 634 58.0
Sabra14G0080800 Salix brachista HOM05D006867 ORTHO05D008676 1.2e-192 677.2 625 59.8
Potri.014G109500 Populus trichocarpa HOM05D006867 ORTHO05D008676 1.6e-192 676.8 642 58.6
Atru.chr5.813 Acer truncatum HOM05D006867 ORTHO05D008676 6.2e-192 674.9 637 57.1
CANSAT56G0208 Cannabis sativa HOM05D006867 ORTHO05D008676 1.1e-191 674.1 640 56.2
CANSAT56G2490 Cannabis sativa HOM05D006867 ORTHO05D008676 2.0e-190 669.8 640 56.1
Nitab4.5_0004754g0040 Nicotiana tabacum HOM05D006867 ORTHO05D008676 7.6e-190 667.9 644 55.3
vmacro08516 Vaccinium macrocarpon HOM05D006867 ORTHO05D008676 9.9e-190 667.5 693 54.7
Sabra02G0132100 Salix brachista HOM05D006867 ORTHO05D008676 2.2e-189 666.4 635 57.8
CiPaw.02G046400 Carya illinoinensis HOM05D006867 ORTHO05D008676 6.4e-189 664.8 640 55.6
Aqoxy5G04385 Aquilegia oxysepala HOM05D006867 ORTHO05D008676 1.4e-188 663.7 644 55.7
Oeu032684.1 Olea europaea HOM05D006867 ORTHO05D008676 7.1e-188 661.4 648 56.8
Haze_15774 Corylus avellana HOM05D006867 ORTHO05D008676 2.3e-186 656.4 627 57.4
MBI11_g13783_MAGBIO Magnolia biondii HOM05D006867 ORTHO05D008676 5.1e-186 655.2 631 55.8
Nitab4.5_0000348g0180 Nicotiana tabacum HOM05D006867 ORTHO05D008676 1.9e-185 653.3 653 54.1
CAN.G90.6 Capsicum annuum HOM05D006867 ORTHO05D008676 1.8e-183 646.7 648 55.2
Prupe.2G203900 Prunus persica HOM05D006867 ORTHO05D008676 1.8e-183 646.7 633 54.5
Glyma.16G015800 Glycine max HOM05D006867 ORTHO05D008676 1.5e-182 643.7 638 55.6
Lalb_Chr17g0343131 Lupinus albus HOM05D006867 ORTHO05D008676 1.5e-182 643.7 653 54.7
Sed0008932 Sechium edule HOM05D006867 ORTHO05D008676 1.5e-182 643.7 639 54.8
Phvul.010G121700 Phaseolus vulgaris HOM05D006867 ORTHO05D008676 7.6e-182 641.3 633 54.5
VMungo0331G1883 Vigna mungo HOM05D006867 ORTHO05D008676 7.6e-182 641.3 638 54.4
Sopen08g006420 Solanum pennellii HOM05D006867 ORTHO05D008676 9.9e-182 641.0 642 54.0
Lalb_Chr10g0101011 Lupinus albus HOM05D006867 ORTHO05D008676 2.2e-181 639.8 640 54.8
arahy.Tifrunner.gnm1.ann1.Y7T28V Arachis hypogaea HOM05D006867 ORTHO05D008676 2.9e-181 639.4 669 53.1
arahy.Tifrunner.gnm1.ann1.L7530T Arachis hypogaea HOM05D006867 ORTHO05D008676 4.9e-181 638.6 669 52.5
Lj3g0022605 Lotus japonicus HOM05D006867 ORTHO05D008676 1.1e-180 637.5 643 54.6
ATR0824G236 Amborella trichopoda HOM05D006867 ORTHO05D008676 2.4e-180 636.3 645 53.0
Glyma.07G047300 Glycine max HOM05D006867 ORTHO05D008676 2.4e-180 636.3 637 54.8
THA.LOC104817409 Tarenaya hassleriana HOM05D006867 ORTHO05D008676 5.4e-180 635.2 643 54.6
Cfa003709 Carpinus fangiana HOM05D006867 ORTHO05D008676 2.7e-179 632.9 630 55.4
Rhsim04G0175800 Rhododendron simsii HOM05D006867 ORTHO05D008676 3.5e-179 632.5 606 56.4
FAN06G0390 Fragaria x ananassa HOM05D006867 ORTHO05D008676 4.6e-179 632.1 632 53.0
CsaV3_3G007140 Cucumis sativus L. HOM05D006867 ORTHO05D008676 3.9e-178 629.0 642 53.0
SalBow6G1414 Salvia bowleyana HOM05D006867 ORTHO05D008676 1.1e-177 627.5 655 53.7
PSO782G1247 Papaver somniferum HOM05D006867 ORTHO05D008676 1.9e-177 626.7 657 53.3
Aa31LG1G28260 Aethionema arabicum HOM05D006867 ORTHO05D008676 3.3e-177 625.9 646 53.1
HanXRQChr15g0480381 Helianthus annuus HOM05D006867 ORTHO05D008676 9.6e-177 624.4 619 54.8
FvH4_7g18270 Fragaria vesca HOM05D006867 ORTHO05D008676 2.8e-176 622.9 632 52.8
HanXRQChr17g0542101 Helianthus annuus HOM05D006867 ORTHO05D008676 3.6e-176 622.5 642 54.2
Lsat_1_v5_gn_3_39660 Lactuca sativa HOM05D006867 ORTHO05D008676 8.1e-176 621.3 650 54.8
MD07G1165200 Malus domestica HOM05D006867 ORTHO05D008676 1.4e-175 620.5 635 54.2
FAN06G3784 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.8e-175 620.2 632 52.7
Migut.I01214 Erythranthe guttata HOM05D006867 ORTHO05D008676 2.4e-175 619.8 645 53.8
RcHm_v2.0_Chr1g0361851 Rosa chinensis HOM05D006867 ORTHO05D008676 1.5e-174 617.1 638 53.4
MSTRG.10869 Avicennia marina HOM05D006867 ORTHO05D008676 5.8e-174 615.1 656 52.7
HPP92_013529 Vanilla planifolia HOM05D006867 ORTHO05D008676 2.9e-173 612.8 633 52.6
AL4G46360 Arabidopsis lyrata HOM05D006867 ORTHO05D008676 4.9e-173 612.1 640 52.0
Hma1.2p1_0074F.1_g039020 Hydrangea macrophylla HOM05D006867 ORTHO05D008676 8.4e-173 611.3 427 67.4
ClCG05G000080 Citrullus lanatus HOM05D006867 ORTHO05D008676 1.1e-172 610.9 580 54.8
Medtr8g023750 Medicago truncatula HOM05D006867 ORTHO05D008676 1.1e-172 610.9 640 52.3
Carub.0004s2962 Capsella rubella HOM05D006867 ORTHO05D008676 2.4e-172 609.8 639 53.4
AT2G46900 Arabidopsis thaliana HOM05D006867 ORTHO05D008676 1.6e-171 607.1 646 53.3
TPR.G32787 Trifolium pratense HOM05D006867 ORTHO05D008676 1.6e-171 607.1 641 53.5
Ca_23461_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 2.1e-171 606.7 643 53.0
Ca_23474_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 2.1e-171 606.7 643 53.0
FAN10G4369 Fragaria x ananassa HOM05D006867 ORTHO05D008676 3.5e-171 605.9 634 51.9
Psat0s2980g0160 Pisum sativum HOM05D006867 ORTHO05D008676 1.0e-170 604.4 645 52.4
Eucgr.L00743 Eucalyptus grandis HOM05D006867 ORTHO05D008676 3.0e-170 602.8 635 53.7
FAN01G1143 Fragaria x ananassa HOM05D006867 ORTHO05D008676 3.9e-170 602.4 589 54.3
FAN03G0961 Fragaria x ananassa HOM05D006867 ORTHO05D008676 3.9e-170 602.4 589 54.3
SGA_v2.0_scaffold122G33256 Striga asiatica HOM05D006867 ORTHO05D008676 3.9e-170 602.4 619 53.8
Thhalv10001357m.g Eutrema salsugineum HOM05D006867 ORTHO05D008676 1.1e-169 600.9 644 51.9
Sp4g28920 Schrenkiella parvula HOM05D006867 ORTHO05D008676 5.6e-169 598.6 637 51.5
FAN10G3600 Fragaria x ananassa HOM05D006867 ORTHO05D008676 9.6e-169 597.8 638 51.7
MD01G1098500 Malus domestica HOM05D006867 ORTHO05D008676 2.1e-168 596.7 638 53.0
TWI59G0124 Tripterygium wilfordii HOM05D006867 ORTHO05D008676 2.1e-168 596.7 642 52.2
CARHR142250 Cardamine hirsuta HOM05D006867 ORTHO05D008676 7.1e-164 581.6 631 51.3
ECA246G2438 Erigeron canadensis HOM05D006867 ORTHO05D008676 5.1e-162 575.5 623 53.0
Zm00001eb102740 Zea mays HOM05D006867 ORTHO05D008676 6.7e-162 575.1 630 50.3
FAN01G0521 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.1e-160 570.1 468 58.5
Os09g0514900 Oryza sativa ssp. japonica HOM05D006867 ORTHO05D008676 4.8e-160 568.9 643 48.4
A05p00940 Brassica napus HOM05D006867 ORTHO05D008676 2.5e-156 556.6 641 49.5
CSS0030251 Camellia sinensis var. sinensis HOM05D006867 ORTHO05D008676 2.7e-155 553.1 546 54.6
BolC4t21761H Brassica oleracea HOM05D006867 ORTHO05D008676 1.5e-153 547.4 641 48.2
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 3.3e-153 546.2 619 49.4
DCAR_022120 Daucus carota HOM05D006867 ORTHO05D008676 5.3e-151 538.9 634 49.8
Peaxi162Scf01205g00180 Petunia axillaris HOM05D006867 ORTHO05D008676 2.4e-143 513.5 394 61.7
BcaC02g12633 Brassica carinata HOM05D006867 ORTHO05D008676 7.7e-134 481.9 640 46.1
Cpa.g.sc1043.2 Carica papaya HOM05D006867 ORTHO05D008676 1.4e-130 471.1 353 64.6
MELO3C005936.2 Cucumis melo HOM05D006867 ORTHO05D008676 9.1e-119 431.8 354 59.0
Pp3c1_12740 Physcomitrium patens HOM05D006867 ORTHO05D008676 2.2e-117 427.2 653 40.6
CDE09G1372 Ceratophyllum demersum HOM05D006867 ORTHO05D008676 5.2e-114 416.0 490 46.3
SMO331G0055 Selaginella moellendorffii HOM05D006867 ORTHO05D008676 4.4e-113 412.9 463 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4360 Anthoceros agrestis HOM05D006867 ORTHO05D008676 4.8e-112 409.5 578 42.2
Pp3c11_2510 Physcomitrium patens HOM05D006867 ORTHO05D008676 1.5e-108 397.9 590 42.0
Mapoly0002s0219 Marchantia polymorpha HOM05D006867 ORTHO05D008676 2.8e-104 383.6 513 41.5
CBR_g36359 Chara braunii HOM05D006867 ORTHO05D008676 1.2e-86 325.1 680 31.2
Cre11.g467639 Chlamydomonas reinhardtii HOM05D006867 ORTHO05D008676 2.4e-79 300.8 517 34.6
PRCOL_00004033 Prasinoderma coloniale HOM05D006867 ORTHO05D008676 1.9e-63 248.1 497 32.8
MCO10G037 Micromonas commoda HOM05D006867 ORTHO05D008676 8.4e-48 196.1 497 28.8
Solyc08g016090.4 Solanum lycopersicum HOM05D006867 ORTHO05D008676 8.7e-45 186.0 417 31.2
C04p72500 Brassica napus HOM05D006867 ORTHO05D008676 1.5e-25 122.1 98 58.2
BolC4t28738H Brassica oleracea HOM05D006867 ORTHO05D008676 1.5e-25 122.1 98 58.2
A04p34720 Brassica napus HOM05D006867 ORTHO05D008676 8.5e-24 116.3 98 56.1


User provided reference genes

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