Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 2.3e-116 422.2 201 100.0
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.7e-77 292.4 254 61.4
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.6e-69 266.5 163 74.2
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 2.0e-67 259.6 187 67.9
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 2.0e-67 259.6 185 68.6
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 7.5e-67 257.7 188 67.0
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 3.7e-66 255.4 189 65.1
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 3.7e-66 255.4 176 69.3
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 3.7e-66 255.4 188 65.4
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 6.3e-66 254.6 187 66.3
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 8.3e-66 254.2 187 65.8
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.4e-65 253.4 189 64.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.4e-65 253.4 188 66.5
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 4.1e-65 251.9 170 68.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.4e-65 251.5 188 66.0
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 5.4e-65 251.5 200 63.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 5.4e-65 251.5 185 64.9
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.2e-64 250.4 184 65.2
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.0e-64 249.6 189 63.5
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 2.0e-64 249.6 188 64.4
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 3.5e-64 248.8 187 64.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.5e-64 248.8 185 66.5
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 5.9e-64 248.1 179 67.0
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.3e-63 246.9 187 65.8
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.3e-63 246.9 174 67.8
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.7e-63 246.5 187 65.2
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.7e-63 246.5 187 64.2
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 1.7e-63 246.5 188 63.3
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.7e-63 246.5 187 63.6
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.7e-63 246.5 186 64.5
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 2.9e-63 245.7 194 61.9
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 2.9e-63 245.7 187 65.2
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.8e-63 245.4 187 63.1
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 5.0e-63 245.0 187 63.6
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 5.0e-63 245.0 184 64.1
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 8.6e-63 244.2 187 66.3
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 8.6e-63 244.2 187 64.7
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.1e-62 243.8 185 63.2
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.1e-62 243.8 189 63.5
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.5e-62 242.7 187 61.5
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.3e-62 242.3 186 64.5
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 3.3e-62 242.3 186 64.0
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 4.2e-62 241.9 187 63.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 4.2e-62 241.9 187 64.7
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 5.5e-62 241.5 157 70.7
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 7.2e-62 241.1 187 63.1
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 7.2e-62 241.1 187 62.6
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 9.5e-62 240.7 189 61.9
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.7e-61 238.4 192 60.9
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.0e-60 237.3 187 59.4
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.4e-60 236.9 180 63.3
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.8e-60 236.5 167 67.1
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-60 236.5 187 63.6
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.3e-60 236.1 187 59.4
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.0e-60 235.7 187 63.1
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.0e-60 235.3 187 63.6
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.0e-60 235.3 189 59.3
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 4.0e-60 235.3 187 62.6
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.2e-60 235.0 189 58.7
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 8.9e-60 234.2 206 55.3
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 8.9e-60 234.2 187 62.0
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 8.9e-60 234.2 188 58.0
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 2.0e-59 233.0 187 61.0
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 2.6e-59 232.6 183 60.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.7e-59 231.5 186 61.3
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 5.7e-59 231.5 187 61.5
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 9.8e-59 230.7 186 60.2
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.8e-58 229.2 194 59.8
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 3.7e-58 228.8 128 85.9
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 3.7e-58 228.8 173 65.3
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 3.7e-58 228.8 143 74.1
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 4.9e-58 228.4 184 60.9
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.1e-57 227.3 186 60.8
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.1e-57 227.3 195 59.5
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.8e-57 226.5 186 59.1
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 2.4e-57 226.1 186 59.1
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 5.4e-57 224.9 190 58.9
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.6e-56 223.4 175 62.9
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.7e-56 222.6 174 63.2
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.7e-56 222.6 206 53.9
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.7e-56 222.6 175 61.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.7e-56 222.6 173 63.0
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 4.5e-56 221.9 187 59.9
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 5.9e-56 221.5 213 54.5
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 7.8e-56 221.1 176 61.4
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 8.6e-55 217.6 187 59.9
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.0e-52 210.7 174 59.8
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.2e-51 207.2 183 55.2
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.7e-50 203.4 169 60.9
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.9e-49 199.9 127 71.7
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 3.2e-49 199.1 176 54.0
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 4.1e-49 198.7 124 75.0
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 5.4e-49 198.4 135 68.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.2e-48 197.2 140 67.1
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 6.0e-48 194.9 128 71.1
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 6.0e-48 194.9 128 70.3
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 5.0e-47 191.8 128 71.1
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 6.6e-47 191.4 127 74.0
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.6e-45 186.8 154 59.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 3.6e-45 185.7 154 58.4
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.8e-44 183.3 128 64.8
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 7.5e-43 177.9 156 57.1
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.3e-42 177.2 140 61.4
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 8.3e-42 174.5 128 67.2
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 8.3e-42 174.5 188 49.5
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 5.4e-41 171.8 174 48.9
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 7.0e-41 171.4 123 63.4
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.5e-40 169.1 118 65.3
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 7.8e-40 167.9 195 40.0
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 5.1e-39 165.2 128 64.1
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.2e-32 144.1 164 48.8
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.1e-32 143.3 115 59.1
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.7e-32 142.9 102 66.7
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 4.4e-27 125.6 84 67.9
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.2e-26 123.2 81 66.7
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 2.4e-25 119.8 176 36.9
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 6.6e-23 111.7 108 53.7
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.0e-12 75.9 34 85.3
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.9e-12 75.1 34 88.2
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.2e-11 74.3 33 90.9
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 4.5e-11 72.4 32 90.6
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 7.6e-11 71.6 32 90.6
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 9.9e-11 71.2 35 80.0
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 9.9e-11 71.2 31 87.1
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.3e-10 70.9 34 79.4
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.7e-10 70.5 31 87.1


User provided reference genes

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