Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 9.9e-83 310.1 157 100.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.7e-69 265.0 159 87.4
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.2e-58 229.2 160 76.2
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.2e-42 176.0 164 59.8
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 5.5e-41 171.4 149 57.7
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 7.2e-41 171.0 146 61.0
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 9.4e-41 170.6 147 60.5
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.1e-40 167.9 149 59.1
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 7.9e-40 167.5 151 59.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.0e-39 165.6 132 59.8
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.2e-39 164.9 153 56.9
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 5.2e-39 164.9 153 56.9
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 5.2e-39 164.9 147 58.5
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 6.7e-39 164.5 149 58.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 8.8e-39 164.1 152 55.9
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.1e-38 163.7 150 58.0
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.1e-38 163.7 148 58.1
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 3.3e-38 162.2 152 55.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.4e-38 161.8 150 54.7
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 7.4e-38 161.0 156 57.1
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.4e-38 161.0 150 52.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.7e-37 159.8 150 60.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.2e-37 159.5 153 55.6
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 3.7e-37 158.7 94 77.7
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 3.7e-37 158.7 163 54.6
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 5.3e-36 154.8 155 52.9
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 9.1e-36 154.1 148 56.1
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 9.1e-36 154.1 148 56.1
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.2e-35 153.7 128 60.9
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.6e-35 153.3 162 51.2
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.6e-35 153.3 147 54.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.6e-35 153.3 128 60.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 1.6e-35 153.3 138 53.6
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 2.0e-35 152.9 158 51.9
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.6e-35 152.5 164 50.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.5e-35 152.1 160 49.4
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.9e-35 151.4 161 51.6
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.7e-35 151.0 151 54.3
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.3e-34 150.2 128 60.9
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.7e-34 149.8 150 56.0
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 3.8e-34 148.7 155 54.2
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 6.5e-34 147.9 150 51.3
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 8.5e-34 147.5 131 55.0
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.5e-33 146.7 152 53.9
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 5.5e-33 144.8 137 52.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 7.2e-33 144.4 122 59.8
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 7.2e-33 144.4 150 52.7
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.7e-32 141.7 155 52.9
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.0e-31 140.6 126 60.3
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.0e-31 140.6 163 50.3
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.0e-31 140.6 163 50.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.8e-31 139.8 145 55.9
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.8e-31 139.8 132 53.8
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.3e-31 139.4 154 51.3
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.3e-31 139.4 158 50.6
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.0e-31 138.7 129 55.0
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 4.0e-31 138.7 151 48.3
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 5.2e-31 138.3 144 53.5
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.5e-30 136.7 148 48.6
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 3.3e-30 135.6 168 45.8
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 7.5e-30 134.4 139 51.1
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.3e-29 133.7 100 64.0
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.8e-29 132.5 161 49.7
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 3.7e-29 132.1 131 50.4
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 8.2e-29 131.0 149 47.7
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.8e-28 129.8 141 50.4
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.4e-28 129.4 148 48.6
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 3.1e-28 129.0 152 52.6
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.1e-28 129.0 150 50.7
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 5.3e-28 128.3 149 46.3
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 7.0e-28 127.9 155 45.2
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.2e-27 127.1 148 49.3
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.0e-27 126.3 151 49.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.0e-27 126.3 129 52.7
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 2.7e-27 125.9 131 51.1
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 4.5e-27 125.2 156 46.2
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 5.9e-27 124.8 156 47.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.9e-27 124.8 151 47.0
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 5.9e-27 124.8 160 45.0
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 5.9e-27 124.8 129 57.4
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 7.7e-27 124.4 160 45.0
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.0e-26 124.0 151 46.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.0e-26 124.0 150 50.0
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.0e-26 124.0 130 55.4
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.3e-26 123.6 154 52.6
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 3.8e-26 122.1 120 55.0
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 5.0e-26 121.7 141 47.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 8.5e-26 120.9 131 47.3
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.1e-25 120.6 159 45.3
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 2.5e-25 119.4 150 48.0
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 4.2e-25 118.6 150 47.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.2e-25 118.6 130 53.1
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.2e-25 117.9 141 46.1
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 7.2e-25 117.9 143 46.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 9.4e-25 117.5 150 44.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 9.4e-25 117.5 150 47.3
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 9.4e-25 117.5 150 44.7
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.0e-23 114.0 128 52.3
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 2.3e-23 112.8 138 47.8
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 5.2e-23 111.7 136 48.5
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 6.8e-23 111.3 147 44.2
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.0e-22 109.8 97 49.5
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.4e-22 109.0 155 46.5
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 9.8e-22 107.5 121 47.9
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.2e-21 106.3 133 48.9
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 2.8e-21 105.9 141 48.2
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.4e-20 103.6 145 46.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 4.5e-19 98.6 141 45.4
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.5e-19 98.6 137 43.8
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.0e-18 97.4 140 44.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.3e-18 96.3 113 47.8
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 3.8e-18 95.5 149 43.0
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.8e-18 95.5 128 44.5
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.0e-18 95.1 145 45.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.1e-17 94.0 74 56.8
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.9e-17 93.2 134 46.3
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.9e-17 93.2 145 42.8
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 4.2e-17 92.0 144 43.8
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 5.5e-17 91.7 134 45.5
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 5.5e-17 91.7 134 45.5
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 5.5e-17 91.7 134 45.5
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 5.5e-17 91.7 134 45.5
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 7.2e-17 91.3 132 44.7
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 4.7e-16 88.6 100 46.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.4e-15 87.0 116 43.1
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.3e-15 86.3 144 43.1
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 2.6e-14 82.8 83 47.0
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 7.5e-14 81.3 135 39.3
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 7.5e-14 81.3 154 30.5
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.9e-13 78.6 157 33.8
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.8e-12 76.6 143 38.5
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.4e-12 76.3 140 38.6
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.0e-10 70.9 130 33.8
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 6.6e-10 68.2 53 54.7
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.3e-09 65.9 56 51.8
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 5.6e-09 65.1 81 51.9
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 9.5e-09 64.3 111 40.5
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.0e-07 60.8 137 30.7


User provided reference genes

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