Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.6e-123 446.0 218 100.0
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 7.3e-92 340.9 211 79.1
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 9.5e-92 340.5 211 79.6
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 5.4e-87 324.7 210 73.8
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.1e-86 322.8 210 74.3
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.7e-86 322.4 215 71.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 6.0e-86 321.2 211 73.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 1.0e-85 320.5 213 74.2
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 3.0e-85 318.9 216 71.8
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 3.0e-85 318.9 213 71.4
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 3.9e-85 318.5 214 70.6
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 6.6e-85 317.8 217 71.9
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 1.1e-84 317.0 214 71.0
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.9e-84 316.2 212 71.7
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.5e-84 315.8 214 72.0
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 3.3e-84 315.5 211 72.5
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.2e-83 313.5 219 68.9
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.2e-83 313.5 210 71.4
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.8e-83 312.4 216 70.8
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.2e-83 311.2 210 70.0
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 8.1e-83 310.8 214 70.6
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.8e-82 309.7 210 70.0
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.8e-82 309.7 210 70.0
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.8e-82 309.7 217 67.7
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.8e-82 309.7 215 67.9
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 2.3e-82 309.3 212 71.7
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.1e-82 308.9 210 71.4
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 4.0e-82 308.5 214 70.1
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 6.8e-82 307.8 212 69.8
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.2e-81 307.0 208 70.7
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.0e-81 306.2 208 70.2
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 4.4e-81 305.1 220 65.9
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 5.8e-81 304.7 216 69.0
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 9.9e-81 303.9 210 70.0
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 9.9e-81 303.9 215 68.8
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 1.3e-80 303.5 215 68.8
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.3e-80 303.5 218 67.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.7e-80 303.1 214 67.8
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 3.8e-80 302.0 214 68.2
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 3.8e-80 302.0 214 68.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 3.8e-80 302.0 214 68.2
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 4.9e-80 301.6 216 67.6
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 8.4e-80 300.8 212 67.9
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-79 300.1 209 69.9
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-79 300.1 209 69.9
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-79 300.1 209 69.9
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-79 300.1 209 69.9
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-79 300.1 209 69.9
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.4e-79 300.1 218 66.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-79 299.7 213 68.1
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.4e-79 299.3 212 69.8
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.4e-79 299.3 211 68.2
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 3.2e-79 298.9 213 67.1
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 3.2e-79 298.9 210 69.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 4.1e-79 298.5 213 67.1
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 4.1e-79 298.5 213 67.1
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.1e-79 298.5 211 67.8
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 5.4e-79 298.1 219 67.1
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 5.4e-79 298.1 213 67.1
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.6e-78 296.6 212 67.5
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.6e-78 296.6 210 67.1
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.1e-78 296.2 215 67.0
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 6.0e-78 294.7 214 66.8
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 6.0e-78 294.7 210 68.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 6.0e-78 294.7 216 65.7
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.5e-76 289.3 214 65.9
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.3e-76 288.9 210 65.7
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.3e-76 288.9 215 67.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 7.3e-76 287.7 214 65.4
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 7.3e-76 287.7 205 66.8
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 2.8e-75 285.8 213 65.3
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-74 283.5 207 66.7
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-74 283.1 212 65.6
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-74 283.1 212 65.6
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 6.9e-74 281.2 212 65.6
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 8.9e-74 280.8 212 65.1
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.0e-73 279.6 221 62.4
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.0e-73 279.6 221 62.4
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.7e-72 276.6 213 63.8
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 3.2e-71 272.3 218 61.0
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.1e-71 271.2 212 62.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 9.3e-71 270.8 214 62.6
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.6e-70 270.0 212 62.7
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.5e-70 268.9 212 62.3
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.0e-69 267.3 211 63.0
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.7e-69 266.5 212 63.2
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 3.0e-69 265.8 211 63.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.9e-69 265.4 214 63.6
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 5.1e-69 265.0 213 62.0
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 5.1e-69 265.0 213 62.0
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 8.7e-69 264.2 214 61.7
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.1e-68 263.8 214 62.6
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.1e-68 263.8 209 64.1
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 2.5e-68 262.7 215 62.3
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 5.6e-68 261.5 213 60.6
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 7.3e-68 261.2 214 62.1
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 9.6e-68 260.8 211 60.2
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.6e-67 260.0 211 60.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.6e-67 258.8 217 60.8
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 6.2e-67 258.1 213 60.1
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.1e-66 257.3 215 59.5
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 1.4e-66 256.9 210 58.6
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.4e-66 256.9 214 58.9
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.8e-66 256.5 211 60.7
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 6.9e-66 254.6 176 68.8
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.9e-66 254.6 214 59.8
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 9.9e-65 250.8 214 58.9
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 9.9e-65 250.8 214 58.9
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.7e-64 250.0 213 58.7
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.9e-64 248.4 223 57.8
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.1e-63 247.3 214 58.4
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 2.4e-63 246.1 210 57.6
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 5.4e-63 245.0 210 59.0
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.2e-62 243.8 210 55.7
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.1e-62 243.0 163 73.6
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 4.6e-62 241.9 210 59.5
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.6e-60 235.0 211 53.1
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.6e-59 233.4 212 54.2
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.6e-59 233.4 207 55.6
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.8e-58 229.9 164 69.5
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.4e-58 229.6 211 51.7
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 9.0e-58 227.6 164 68.9
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.9e-55 219.9 162 66.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 8.7e-53 211.1 163 64.4
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 2.4e-50 203.0 166 62.0
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.2e-49 200.7 207 52.7
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.5e-49 200.3 160 62.5
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.1e-47 194.1 207 50.7
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 7.1e-47 191.4 208 50.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 4.3e-44 182.2 130 68.5
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 6.3e-43 178.3 210 46.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.8e-42 176.8 127 62.2
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 3.4e-41 172.6 133 61.7
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.8e-40 169.1 127 59.8
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 8.7e-37 157.9 207 44.9
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 9.4e-31 137.9 90 71.1
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 2.1e-30 136.7 90 71.1
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 3.7e-27 125.9 97 61.9
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.7e-16 90.5 206 35.4
HanXRQChr16g0530671 Helianthus annuus HOM05D003144 ORTHO05D003539 2.0e-09 67.0 147 29.9
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 1.7e-08 63.9 135 33.3
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 2.2e-08 63.5 143 31.5
Psat4g094920 Pisum sativum HOM05D003144 ORTHO05D003539 2.2e-08 63.5 172 27.3
Nn1g04916 Nelumbo nucifera HOM05D003144 ORTHO05D003539 5.0e-08 62.4 156 28.8
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 8.5e-08 61.6 140 30.0
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 3.2e-07 59.7 148 29.7
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 3.2e-07 59.7 130 31.5
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 3.2e-07 59.7 134 30.6
TWI09G1569 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 3.2e-07 59.7 139 30.9
CANSAT01G2043 Cannabis sativa HOM05D003144 ORTHO05D003539 4.2e-07 59.3 144 31.2
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 4.2e-07 59.3 140 27.9
Lj4A205T21 Lonicera japonica HOM05D003144 ORTHO05D003539 5.5e-07 58.9 138 28.3
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 7.2e-07 58.5 132 30.3
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 9.4e-07 58.2 145 28.3
CiPaw.01G044800 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.2e-06 57.8 140 30.7
CiPaw.01G045400 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.2e-06 57.8 140 30.7
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 1.2e-06 57.8 132 31.1
Nn1g04920 Nelumbo nucifera HOM05D003144 ORTHO05D003539 1.2e-06 57.8 145 29.7
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 1.6e-06 57.4 138 27.5
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 1.6e-06 57.4 148 27.7
Dinv13496 Davidia involucrata HOM05D003144 ORTHO05D003539 1.6e-06 57.4 138 29.7
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 1.6e-06 57.4 121 31.4
CiPaw.02G020200 Carya illinoinensis HOM05D003144 ORTHO05D003539 2.7e-06 56.6 202 25.7
Medtr8g077120 Medicago truncatula HOM05D003144 ORTHO05D003539 2.7e-06 56.6 140 25.7
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 4.7e-06 55.8 127 30.7
Sed0014839 Sechium edule HOM05D003144 ORTHO05D003539 4.7e-06 55.8 152 27.0
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 6.1e-06 55.5 138 26.8
RcHm_v2.0_Chr2g0100911 Rosa chinensis HOM05D003144 ORTHO05D003539 6.1e-06 55.5 140 29.3
Ah.03g141130 Amaranthus hybridus HOM05D003144 ORTHO05D003539 8.0e-06 55.1 131 29.0
CiPaw.01G045100 Carya illinoinensis HOM05D003144 ORTHO05D003539 8.0e-06 55.1 140 30.0


User provided reference genes

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