Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 2.1e-56 222.2 119 100.0
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 1.1e-30 136.7 121 69.4
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 1.7e-26 122.9 120 61.7
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 3.3e-14 82.0 88 51.1
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.7e-13 79.7 108 45.4
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 4.8e-13 78.2 90 53.3
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.8e-13 78.2 88 53.4
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 1.1e-12 77.0 88 52.3
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 1.4e-12 76.6 88 48.9
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 1.4e-12 76.6 111 44.1
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 1.4e-12 76.6 103 45.6
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.8e-12 76.3 88 52.3
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.8e-12 76.3 88 52.3
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 1.8e-12 76.3 95 47.4
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.8e-12 76.3 89 49.4
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 1.8e-12 76.3 88 47.7
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 2.4e-12 75.9 90 48.9
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 2.4e-12 75.9 90 48.9
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 3.1e-12 75.5 91 49.5
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 4.1e-12 75.1 88 47.7
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 4.1e-12 75.1 93 46.2
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 5.3e-12 74.7 90 50.0
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 5.3e-12 74.7 89 49.4
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 5.3e-12 74.7 92 47.8
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 6.9e-12 74.3 92 50.0
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 9.1e-12 73.9 88 51.1
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 9.1e-12 73.9 89 48.3
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 1.2e-11 73.6 95 42.1
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 1.2e-11 73.6 88 46.6
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 1.2e-11 73.6 90 48.9
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 1.2e-11 73.6 88 46.6
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 1.5e-11 73.2 110 43.6
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 2.6e-11 72.4 95 45.3
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 2.6e-11 72.4 96 46.9
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 3.4e-11 72.0 88 51.1
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.4e-11 72.0 88 51.1
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 3.4e-11 72.0 88 47.7
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 3.4e-11 72.0 106 43.4
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 5.9e-11 71.2 89 44.9
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 5.9e-11 71.2 91 47.3
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 5.9e-11 71.2 89 47.2
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 1.0e-10 70.5 104 44.2
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.3e-10 70.1 89 44.9
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 1.7e-10 69.7 92 46.7
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 1.7e-10 69.7 90 46.7
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 2.2e-10 69.3 92 44.6
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 2.2e-10 69.3 106 38.7
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 2.9e-10 68.9 92 44.6
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 2.9e-10 68.9 96 43.8
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 6.5e-10 67.8 88 46.6
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 6.5e-10 67.8 91 46.2
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 6.5e-10 67.8 88 44.3
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 1.4e-09 66.6 88 46.6
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 1.4e-09 66.6 91 46.2
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.9e-09 66.2 91 46.2
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 2.5e-09 65.9 88 45.5
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 2.5e-09 65.9 111 39.6
Ah.01g023270 Amaranthus hybridus HOM05D003374 ORTHO05D009470 4.2e-09 65.1 111 38.7
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 5.5e-09 64.7 107 40.2
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 5.5e-09 64.7 107 40.2
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 7.2e-09 64.3 89 47.2
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 7.2e-09 64.3 102 40.2
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 9.4e-09 63.9 88 45.5
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 1.2e-08 63.5 88 43.2
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 1.2e-08 63.5 88 45.5
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 1.6e-08 63.2 97 40.2
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 4.7e-08 61.6 93 45.2
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 7.9e-08 60.8 97 39.2
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 1.8e-07 59.7 102 38.2
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 2.3e-07 59.3 87 41.4
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 3.0e-07 58.9 88 42.0
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 5.1e-07 58.2 105 38.1
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 5.1e-07 58.2 88 42.0
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 6.7e-07 57.8 88 39.8
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 8.8e-07 57.4 102 38.2
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 8.8e-07 57.4 102 38.2
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 8.8e-07 57.4 102 38.2
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 8.8e-07 57.4 102 38.2
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 8.8e-07 57.4 105 36.2
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 1.1e-06 57.0 102 38.2
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 1.1e-06 57.0 93 40.9
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 1.1e-06 57.0 43 60.5
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 2.0e-06 56.2 102 37.3
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 2.0e-06 56.2 88 39.8
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 2.0e-06 56.2 88 39.8
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 3.3e-06 55.5 64 50.0
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 4.4e-06 55.1 104 34.6
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 5.7e-06 54.7 102 37.3
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 5.7e-06 54.7 102 37.3
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 5.7e-06 54.7 68 50.0
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 7.4e-06 54.3 102 36.3
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 7.4e-06 54.3 102 36.3
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 7.4e-06 54.3 102 36.3
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 7.4e-06 54.3 102 34.3
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 7.4e-06 54.3 104 34.6


User provided reference genes

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