Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 7.9e-129 463.8 232 100.0
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.0e-107 391.3 226 84.1
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.5e-106 389.0 227 83.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 5.7e-103 377.9 230 82.2
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 2.8e-94 349.0 228 75.0
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.3e-91 339.3 226 71.2
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 2.3e-91 339.3 222 73.4
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.9e-91 339.0 221 74.2
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.5e-90 336.7 225 72.0
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 2.5e-90 335.9 228 68.4
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.5e-90 335.9 228 70.2
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 4.3e-90 335.1 226 71.2
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 4.3e-90 335.1 227 70.9
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 5.6e-90 334.7 228 71.1
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 3.6e-89 332.0 227 71.4
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.8e-88 329.7 227 69.6
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.3e-88 329.3 225 72.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 4.0e-88 328.6 225 69.8
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 4.0e-88 328.6 225 71.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 8.9e-88 327.4 227 70.0
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 8.9e-88 327.4 224 72.3
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 3.4e-87 325.5 221 71.0
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 3.4e-87 325.5 223 70.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 4.4e-87 325.1 225 68.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 2.2e-86 322.8 231 69.3
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.1e-85 320.5 228 69.3
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.4e-85 320.1 222 71.2
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.1e-85 318.5 222 68.0
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 4.1e-85 318.5 226 67.3
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 9.2e-85 317.4 226 67.7
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.2e-84 317.0 221 69.2
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.2e-84 317.0 224 69.6
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.7e-84 315.8 224 69.2
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 5.9e-84 314.7 229 65.1
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 7.8e-84 314.3 220 69.5
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.3e-83 313.5 227 67.8
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.7e-83 313.2 225 66.7
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 6.6e-83 311.2 223 68.2
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 8.6e-83 310.8 224 67.4
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.5e-82 309.3 223 65.5
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 4.3e-82 308.5 221 67.0
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 4.3e-82 308.5 241 64.3
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 4.3e-82 308.5 233 64.8
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 5.6e-82 308.1 229 64.2
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.3e-82 307.8 227 64.3
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-81 307.0 219 67.1
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 1.6e-81 306.6 222 65.8
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 4.7e-81 305.1 248 61.7
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.0e-81 304.3 229 63.3
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.1e-80 303.9 224 66.5
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.1e-80 303.9 229 65.1
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.4e-80 303.5 228 65.8
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 1.4e-80 303.5 228 65.4
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.4e-80 303.5 229 63.3
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.8e-80 303.1 225 66.2
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 4.0e-80 302.0 224 65.2
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 4.0e-80 302.0 224 65.2
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 5.2e-80 301.6 224 65.6
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 5.2e-80 301.6 230 66.1
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.8e-80 301.2 229 63.3
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 6.8e-80 301.2 222 65.8
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 6.8e-80 301.2 228 65.8
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.2e-79 300.4 226 63.3
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.5e-79 300.1 228 64.9
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 3.4e-79 298.9 220 66.4
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 4.4e-79 298.5 225 63.1
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 5.8e-79 298.1 229 63.3
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 2.9e-78 295.8 207 68.6
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 5.4e-77 291.6 224 63.8
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.0e-77 291.2 223 64.1
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 9.2e-77 290.8 225 62.7
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.2e-76 290.4 225 62.2
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 2.7e-76 289.3 221 62.4
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.0e-75 287.3 223 63.2
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.3e-75 287.0 226 62.8
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.1e-74 283.9 224 61.6
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-74 283.5 233 60.9
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.9e-74 283.1 230 61.3
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 2.5e-74 282.7 233 60.5
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 3.3e-74 282.3 230 59.6
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 2.8e-73 279.3 232 59.5
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.8e-72 274.6 248 57.3
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.4e-71 271.9 248 56.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.3e-70 270.4 248 56.5
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.7e-67 260.0 218 62.4
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 2.8e-65 252.7 241 54.4
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.9e-64 247.7 164 70.7
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 1.3e-62 243.8 164 69.5
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 7.1e-61 238.0 220 54.1
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.3e-59 233.0 144 75.0
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 3.9e-59 232.3 237 55.7
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.5e-58 230.3 171 64.9
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.3e-58 229.2 162 68.5
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 3.3e-58 229.2 162 68.5
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 3.3e-58 229.2 237 55.3
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 5.6e-58 228.4 169 64.5
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.6e-57 226.9 174 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 4.0e-56 222.2 227 52.0
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 4.0e-56 222.2 227 52.0
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.4e-53 213.8 225 49.3
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 1.9e-53 213.4 166 63.9
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.7e-52 209.5 221 49.3
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 1.7e-51 206.8 230 50.4
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 7.3e-50 201.4 171 60.8
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.1e-48 197.6 170 60.6
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 7.1e-45 184.9 121 67.8
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 7.9e-44 181.4 121 65.3
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 3.3e-42 176.0 251 41.8
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 1.2e-39 167.5 144 59.0
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 8.4e-38 161.4 109 70.6
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 2.1e-33 146.7 120 61.7
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.1e-32 144.4 117 64.1
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 2.4e-32 143.3 146 52.7
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 5.3e-32 142.1 144 53.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 3.7e-25 119.4 223 34.5
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 6.9e-24 115.2 105 58.1
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.6e-20 104.0 69 73.9
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 2.0e-15 87.0 83 54.2
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 2.0e-15 87.0 83 54.2
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 2.6e-15 86.7 58 69.0
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 2.6e-15 86.7 58 69.0
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.1e-08 64.7 47 63.8
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.5e-07 60.8 184 26.6


User provided reference genes

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