Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g007240 Amaranthus hybridus HOM05D020881 ORTHO05D008469 0.0e+00 1222.6 744 100.0
EL10Ac9g22125 Beta vulgaris HOM05D020881 ORTHO05D008469 9.8e-96 355.5 842 39.7
AUR62030920 Chenopodium quinoa HOM05D020881 ORTHO05D008469 1.5e-91 341.7 903 39.8
AUR62027081 Chenopodium quinoa HOM05D020881 ORTHO05D008469 9.2e-86 322.4 901 39.1
Hund00400 Selenicereus undatus HOM05D020881 ORTHO05D008469 7.8e-61 239.6 514 37.5
Sc08g0004130 Simmondsia chinensis HOM05D020881 ORTHO05D008469 7.1e-38 163.3 487 33.5
GSVIVG01007736001 Vitis vinifera HOM05D000855 ORTHO05D008469 2.5e-19 101.7 232 37.1
Atru.chr9.2483 Acer truncatum HOM05D000855 ORTHO05D008469 1.1e-17 96.3 636 25.5
Dinv20648 Davidia involucrata HOM05D000855 ORTHO05D008469 1.1e-17 96.3 182 37.4
Actinidia19324 Actinidia chinensis HOM05D000855 ORTHO05D008469 9.0e-17 93.2 192 35.4
Actinidia33071 Actinidia chinensis HOM05D000855 ORTHO05D008469 2.0e-16 92.0 167 39.5
Cfa019138 Carpinus fangiana HOM05D000855 ORTHO05D008469 7.6e-16 90.1 193 39.9
Haze_07505 Corylus avellana HOM05D000855 ORTHO05D008469 2.9e-15 88.2 135 46.7
TWI23G1303 Tripterygium wilfordii HOM05D000855 ORTHO05D008469 3.8e-15 87.8 223 35.0
Sabra12G0058300 Salix brachista HOM05D000855 ORTHO05D008469 6.5e-15 87.0 571 25.2
CSS0004279 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008469 8.5e-15 86.7 188 36.7
Potri.012G081500 Populus trichocarpa HOM05D000855 ORTHO05D008469 1.4e-14 85.9 587 26.2
TWI14G0012 Tripterygium wilfordii HOM05D000855 ORTHO05D008469 5.5e-14 84.0 223 34.1
Ciclev10018990m.g Citrus clementina HOM05D000855 ORTHO05D008469 7.2e-14 83.6 193 36.3
Gohir.A06G170100 Gossypium hirsutum HOM05D000855 ORTHO05D008469 3.6e-13 81.3 596 24.8
Gorai.N007400 Gossypium raimondii HOM05D000855 ORTHO05D008469 7.9e-13 80.1 593 25.3
MD14G1179900 Malus domestica HOM05D000855 ORTHO05D008469 7.9e-13 80.1 177 37.9
Gohir.D06G177900 Gossypium hirsutum HOM05D000855 ORTHO05D008469 1.3e-12 79.3 593 25.1
QL10p011511 Quercus lobata HOM05D000855 ORTHO05D008469 1.3e-12 79.3 231 35.5
CSS0039177 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008469 1.8e-12 79.0 188 35.6
CiPaw.12G026700 Carya illinoinensis HOM05D000855 ORTHO05D008469 1.8e-12 79.0 143 39.9
Duzib106G2025 Durio zibethinus HOM05D000855 ORTHO05D008469 3.9e-12 77.8 171 36.3
Hma1.2p1_0176F.1_g077363 Hydrangea macrophylla HOM05D000855 ORTHO05D008469 5.1e-12 77.4 172 37.8
DCAR_031321 Daucus carota HOM05D000855 ORTHO05D008469 6.7e-12 77.0 169 38.5
Sabra15G0102000 Salix brachista HOM05D002152 ORTHO05D002737 1.1e-11 76.3 62 66.1
Manes.06G105300 Manihot esculenta HOM05D000855 ORTHO05D008469 1.5e-11 75.9 614 25.1
MD06G1173400 Malus domestica HOM05D000855 ORTHO05D008469 1.9e-11 75.5 175 36.0
Nitab4.5_0000003g0610 Nicotiana tabacum HOM05D000855 ORTHO05D008469 1.9e-11 75.5 507 23.7
Prupe.5G172900 Prunus persica HOM05D000855 ORTHO05D008469 3.3e-11 74.7 175 38.3
ClCG01G013160 Citrullus lanatus HOM05D000855 ORTHO05D008469 7.4e-11 73.6 140 39.3
CANSAT80G1757 Cannabis sativa HOM05D000855 ORTHO05D008469 9.7e-11 73.2 162 37.0
CsaV3_1G008500 Cucumis sativus L. HOM05D000855 ORTHO05D008469 9.7e-11 73.2 140 40.0
Rhsim08G0172900 Rhododendron simsii HOM05D000855 ORTHO05D008469 1.3e-10 72.8 118 39.8
FvH4_3g28680 Fragaria vesca HOM05D000855 ORTHO05D008469 1.6e-10 72.4 168 35.1
Thecc.10G121100 Theobroma cacao HOM05D000855 ORTHO05D008469 1.6e-10 72.4 93 49.5
FAN11G2252 Fragaria x ananassa HOM05D000855 ORTHO05D008469 2.8e-10 71.6 168 35.1
Manes.14G065400 Manihot esculenta HOM05D000855 ORTHO05D008469 2.8e-10 71.6 106 45.3
MELO3C002265.2 Cucumis melo HOM05D000855 ORTHO05D008469 3.7e-10 71.2 197 33.0
FvH4_5g29880 Fragaria vesca HOM05D000855 ORTHO05D008469 4.8e-10 70.9 161 37.3
FAN18G4278 Fragaria x ananassa HOM05D000855 ORTHO05D008469 4.8e-10 70.9 161 37.3
vmacro19393 Vaccinium macrocarpon HOM05D000855 ORTHO05D008469 8.2e-10 70.1 160 33.8
RcHm_v2.0_Chr7g0223481 Rosa chinensis HOM05D000855 ORTHO05D008469 1.4e-09 69.3 232 31.9
COL.COLO4_21664 Corchorus olitorius HOM05D000855 ORTHO05D008469 1.8e-09 68.9 195 34.4
FAN08G1626 Fragaria x ananassa HOM05D000855 ORTHO05D008469 1.8e-09 68.9 161 36.6
FAN25G0827 Fragaria x ananassa HOM05D000855 ORTHO05D008469 1.8e-09 68.9 172 33.1
PGSC0003DMG400026995 Solanum tuberosum HOM05D000855 ORTHO05D008469 1.8e-09 68.9 111 38.7
FAN13G1685 Fragaria x ananassa HOM05D000855 ORTHO05D008469 2.4e-09 68.6 121 38.8
PGR083G1278 Punica granatum HOM05D000855 ORTHO05D008469 2.4e-09 68.6 169 29.0
FAN04G0669 Fragaria x ananassa HOM05D000855 ORTHO05D008469 4.1e-09 67.8 161 36.0
RcHm_v2.0_Chr7g0223491 Rosa chinensis HOM05D000855 ORTHO05D008469 5.3e-09 67.4 218 32.6
FAN16G3561 Fragaria x ananassa HOM05D000855 ORTHO05D008469 1.2e-08 66.2 163 32.5
FAN21G0403 Fragaria x ananassa HOM05D000855 ORTHO05D008469 1.2e-08 66.2 204 32.8
Lj5C125T4 Lonicera japonica HOM05D000855 ORTHO05D008469 1.2e-08 66.2 571 24.5
Sed0010009 Sechium edule HOM05D000855 ORTHO05D008469 1.2e-08 66.2 74 55.4
Sed0024227 Sechium edule HOM05D000855 ORTHO05D008469 1.2e-08 66.2 71 54.9
arahy.Tifrunner.gnm1.ann1.EM0BSF Arachis hypogaea HOM05D000855 ORTHO05D008469 2.6e-08 65.1 200 32.5
arahy.Tifrunner.gnm1.ann1.EQ53NA Arachis hypogaea HOM05D000855 ORTHO05D008469 2.6e-08 65.1 200 32.5
arahy.Tifrunner.gnm1.ann1.TBA5Q4 Arachis hypogaea HOM05D000855 ORTHO05D008469 2.6e-08 65.1 200 32.5
Nn4g22754 Nelumbo nucifera HOM05D000855 ORTHO05D001716 3.4e-08 64.7 463 26.8
CAN.G628.82 Capsicum annuum HOM05D000855 ORTHO05D008469 1.3e-07 62.8 69 46.4
Eucgr.B00304 Eucalyptus grandis HOM05D000855 ORTHO05D008469 1.3e-07 62.8 78 48.7
Solyc06g071490.3 Solanum lycopersicum HOM05D000855 ORTHO05D008469 2.2e-07 62.0 72 45.8
Sopen06g027780 Solanum pennellii HOM05D000855 ORTHO05D008469 2.2e-07 62.0 72 45.8
Nitab4.5_0004210g0020 Nicotiana tabacum HOM05D000855 ORTHO05D008469 2.9e-07 61.6 505 24.2
PGR083G1200 Punica granatum HOM05D000855 ORTHO05D001716 2.9e-07 61.6 460 24.3
Carub.0005s1430 Capsella rubella HOM05D000855 ORTHO05D008469 1.4e-06 59.3 52 61.5
Lj9C448T5 Lonicera japonica HOM05D000855 ORTHO05D008469 1.4e-06 59.3 184 28.3
ECA246G2551 Erigeron canadensis HOM05D000855 ORTHO05D008469 1.9e-06 58.9 112 40.2
AL5G27520 Arabidopsis lyrata HOM05D000855 ORTHO05D008469 2.5e-06 58.5 52 59.6
AT3G48187 Arabidopsis thaliana HOM05D000855 ORTHO05D008469 2.5e-06 58.5 52 61.5
A06p19510 Brassica napus HOM05D000855 ORTHO05D008469 3.2e-06 58.2 51 56.9
BraA06t25030Z Brassica rapa HOM05D000855 ORTHO05D008469 3.2e-06 58.2 51 56.9
Lalb_Chr17g0337151 Lupinus albus HOM05D000855 ORTHO05D008469 3.2e-06 58.2 137 34.3
TAR374G0945 Trochodendron aralioides HOM05D000855 ORTHO05D008469 3.2e-06 58.2 53 58.5
TAR629G1958 Trochodendron aralioides HOM05D000855 ORTHO05D001716 4.2e-06 57.8 507 23.5
Cpa.g.c30444 Carica papaya HOM05D000855 ORTHO05D008469 9.4e-06 56.6 569 23.2
Manes.15G166000 Manihot esculenta HOM05D000855 ORTHO05D001716 9.4e-06 56.6 504 22.4


User provided reference genes

Program Settings