Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g007050 Amaranthus hybridus HOM05D002412 ORTHO05D002516 2.9e-114 415.2 209 100.0
EL10Ac9g22186 Beta vulgaris HOM05D002412 ORTHO05D002516 1.2e-30 137.5 179 53.6
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.6e-22 109.8 212 42.0
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 2.3e-18 96.7 215 39.5
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 5.1e-18 95.5 209 38.3
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 1.5e-17 94.0 201 37.8
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 5.7e-17 92.0 212 34.9
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 7.4e-17 91.7 209 36.4
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 9.6e-17 91.3 209 38.3
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 1.3e-16 90.9 221 38.5
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 1.6e-16 90.5 196 36.2
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 2.8e-16 89.7 208 38.9
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 2.8e-16 89.7 210 38.1
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 3.7e-16 89.4 211 36.5
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 3.7e-16 89.4 208 37.0
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 3.7e-16 89.4 208 37.0
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 3.7e-16 89.4 206 38.8
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 3.7e-16 89.4 203 37.9
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.4e-15 87.4 211 36.5
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 1.4e-15 87.4 206 36.4
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 1.8e-15 87.0 199 39.7
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 1.8e-15 87.0 202 36.6
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 5.3e-15 85.5 216 36.6
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 6.9e-15 85.1 201 34.8
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 9.0e-15 84.7 203 37.9
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 1.2e-14 84.3 182 39.0
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.2e-14 84.3 208 36.5
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.5e-14 84.0 203 35.0
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.5e-14 84.0 209 36.4
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.5e-14 84.0 220 36.4
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.5e-14 84.0 197 36.0
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 2.0e-14 83.6 203 36.5
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.4e-14 82.8 214 37.9
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 3.4e-14 82.8 199 35.2
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 3.4e-14 82.8 205 40.0
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 3.4e-14 82.8 210 38.1
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 4.5e-14 82.4 206 35.0
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 1.0e-13 81.3 204 35.3
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.0e-13 81.3 196 35.2
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.0e-13 81.3 196 35.2
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 1.0e-13 81.3 204 35.3
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.0e-13 81.3 199 37.7
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 1.7e-13 80.5 218 36.2
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 2.2e-13 80.1 196 34.7
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 2.2e-13 80.1 225 38.2
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 2.9e-13 79.7 208 35.6
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 3.8e-13 79.3 167 40.1
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 3.8e-13 79.3 167 40.1
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 3.8e-13 79.3 172 41.3
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 5.0e-13 79.0 200 37.0
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 5.0e-13 79.0 211 33.2
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 5.0e-13 79.0 193 35.8
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 6.5e-13 78.6 172 39.0
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 6.5e-13 78.6 196 34.2
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 6.5e-13 78.6 190 37.4
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 6.5e-13 78.6 222 34.2
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 8.4e-13 78.2 202 36.6
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 8.4e-13 78.2 208 35.6
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 8.4e-13 78.2 188 35.1
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 2.5e-12 76.6 195 36.4
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.5e-12 76.6 187 35.3
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 2.5e-12 76.6 201 34.3
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 2.5e-12 76.6 192 37.0
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 3.2e-12 76.3 210 35.2
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.2e-12 75.9 195 38.5
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 5.5e-12 75.5 204 35.3
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 5.5e-12 75.5 220 34.1
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 7.1e-12 75.1 209 34.4
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.3e-12 74.7 202 34.2
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.2e-11 74.3 194 36.1
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.2e-11 74.3 201 37.3
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-11 73.9 172 39.0
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-11 73.9 207 33.8
PGSC0003DMG400025836 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.6e-11 73.9 216 35.6
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 2.1e-11 73.6 168 38.7
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 2.1e-11 73.6 168 38.7
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.1e-11 73.6 212 33.0
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.1e-11 73.6 211 34.6
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.1e-11 73.6 211 34.6
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 2.1e-11 73.6 197 33.5
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 2.1e-11 73.6 204 35.3
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.7e-11 73.2 207 33.8
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 2.7e-11 73.2 206 32.5
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.5e-11 72.8 197 35.0
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 4.6e-11 72.4 201 34.8
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 4.6e-11 72.4 192 35.4
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 4.6e-11 72.4 171 37.4
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 4.6e-11 72.4 194 36.1
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 6.1e-11 72.0 196 34.2
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 6.1e-11 72.0 205 32.7
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 7.9e-11 71.6 214 35.5
MSTRG.20224 Avicennia marina HOM05D002412 ORTHO05D002516 7.9e-11 71.6 220 33.6
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.0e-10 71.2 202 37.1
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 1.0e-10 71.2 201 33.3
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 1.0e-10 71.2 200 35.5
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.3e-10 70.9 184 35.9
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.3e-10 70.9 201 35.3
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 1.8e-10 70.5 199 34.7
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 1.8e-10 70.5 191 35.1
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 3.0e-10 69.7 199 33.7
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.0e-10 69.7 183 33.9
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 3.9e-10 69.3 208 36.5
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 5.1e-10 68.9 199 38.7
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 5.1e-10 68.9 189 35.4
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.1e-10 68.9 208 32.2
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 5.1e-10 68.9 169 32.5
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 6.7e-10 68.6 136 39.7
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 8.7e-10 68.2 199 32.7
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.1e-09 67.8 192 34.9
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.5e-09 67.4 175 37.7
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 2.5e-09 66.6 195 33.8
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 3.3e-09 66.2 172 36.0
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 3.3e-09 66.2 188 34.0
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 3.3e-09 66.2 205 30.7
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.3e-09 66.2 190 33.2
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 3.3e-09 66.2 149 36.2
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 3.3e-09 66.2 219 34.2
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.3e-09 65.9 190 33.2
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 5.7e-09 65.5 214 37.9
Hund06511 Selenicereus undatus HOM05D002412 ORTHO05D002516 5.7e-09 65.5 140 41.4
MSTRG.16674 Avicennia marina HOM05D002412 ORTHO05D002516 7.4e-09 65.1 210 33.8
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.7e-09 64.7 193 34.2
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 1.3e-08 64.3 197 33.5
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.6e-08 63.9 190 35.3
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 2.2e-08 63.5 200 30.5
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 2.8e-08 63.2 191 31.9
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 4.8e-08 62.4 188 35.1
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 6.3e-08 62.0 208 30.3
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.4e-07 60.8 198 31.3
Thhalv10026460m.g Eutrema salsugineum HOM05D002412 ORTHO05D002516 1.4e-07 60.8 168 36.3
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.4e-07 60.8 193 33.2
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.4e-07 60.8 215 28.8
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.4e-07 60.8 205 30.2
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 1.8e-07 60.5 138 35.5
BcaNung04670 Brassica carinata HOM05D002412 ORTHO05D002516 1.8e-07 60.5 169 34.3
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 1.8e-07 60.5 155 35.5
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 2.4e-07 60.1 190 32.6
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.4e-07 60.1 211 32.2
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.1e-07 59.7 145 34.5
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 3.1e-07 59.7 154 36.4
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 3.1e-07 59.7 197 34.0
SGA_v2.0_scaffold225G43055 Striga asiatica HOM05D002412 ORTHO05D002516 3.1e-07 59.7 214 29.9
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 4.1e-07 59.3 138 37.7
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 4.1e-07 59.3 193 35.8
TPR.G13172 Trifolium pratense HOM05D002412 ORTHO05D002516 4.1e-07 59.3 169 34.3
CSS0009753 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 5.3e-07 58.9 191 35.1
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 5.3e-07 58.9 171 34.5
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 5.3e-07 58.9 150 37.3
FAN15G1641 Fragaria x ananassa HOM05D002412 ORTHO05D002516 5.3e-07 58.9 213 34.7
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 6.9e-07 58.5 170 34.7
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 9.0e-07 58.2 190 34.2
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 9.0e-07 58.2 174 32.2
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 9.0e-07 58.2 194 33.0
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 1.2e-06 57.8 191 29.3
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.5e-06 57.4 206 30.6
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.5e-06 57.4 172 34.3
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 1.5e-06 57.4 203 30.5
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 2.6e-06 56.6 144 36.8
FAN24G3376 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.6e-06 56.6 214 35.5
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 2.6e-06 56.6 193 29.0
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 2.6e-06 56.6 122 41.0
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 3.4e-06 56.2 191 29.3
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 5.9e-06 55.5 143 35.7
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 7.7e-06 55.1 97 37.1
MSTRG.1024 Avicennia marina HOM05D002412 ORTHO05D002516 1.0e-05 54.7 141 36.9
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 1.0e-05 54.7 223 28.7
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 1.0e-05 54.7 142 34.5
RcHm_v2.0_Chr6g0252561 Rosa chinensis HOM05D002412 ORTHO05D002516 1.0e-05 54.7 225 34.2


User provided reference genes

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