Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 6.5e-210 733.8 369 100.0
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 2.9e-157 558.9 468 66.7
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 2.4e-156 555.8 464 65.5
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 6.0e-155 551.2 468 65.6
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 6.2e-144 514.6 458 60.7
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 2.7e-139 499.2 459 59.7
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 3.3e-137 492.3 463 58.1
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 4.3e-137 491.9 454 58.6
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 5.6e-137 491.5 465 58.3
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 1.3e-136 490.3 455 59.6
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 1.6e-136 490.0 460 58.7
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 2.1e-136 489.6 456 57.9
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 3.7e-136 488.8 453 57.8
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 4.8e-136 488.4 453 57.0
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 4.8e-136 488.4 453 57.0
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 1.4e-135 486.9 456 57.7
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 1.4e-135 486.9 452 58.0
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 3.1e-135 485.7 457 58.4
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 9.0e-135 484.2 449 59.2
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 1.2e-134 483.8 452 57.3
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 2.0e-134 483.0 453 56.5
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 3.4e-134 482.3 462 57.1
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 5.8e-134 481.5 453 56.3
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 3.8e-133 478.8 457 58.4
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 3.8e-133 478.8 460 56.7
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 6.5e-133 478.0 453 57.0
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 8.4e-133 477.6 461 57.5
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 8.4e-133 477.6 455 56.5
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 1.9e-132 476.5 452 57.1
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 1.2e-131 473.8 460 57.0
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 2.1e-131 473.0 463 56.6
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 3.5e-131 472.2 453 57.0
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 3.5e-131 472.2 453 57.0
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 6.0e-131 471.5 459 57.1
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 6.0e-131 471.5 460 56.7
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 6.0e-131 471.5 455 56.3
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 7.9e-131 471.1 461 57.0
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 7.9e-131 471.1 452 56.2
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 7.9e-131 471.1 461 56.4
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 1.0e-130 470.7 453 56.3
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 1.0e-130 470.7 458 56.3
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 1.0e-130 470.7 458 55.9
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 1.8e-130 469.9 457 56.7
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 1.8e-130 469.9 455 57.6
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 2.3e-130 469.5 461 57.3
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 3.0e-130 469.2 458 57.4
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 3.9e-130 468.8 456 57.7
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 8.7e-130 467.6 461 56.8
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 2.5e-129 466.1 454 57.3
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 4.3e-129 465.3 434 58.1
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 7.4e-129 464.5 463 55.5
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 1.6e-128 463.4 463 55.3
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 2.8e-128 462.6 452 56.4
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 2.8e-128 462.6 460 55.4
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 3.7e-128 462.2 459 56.0
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 4.8e-128 461.8 457 56.0
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 6.3e-128 461.5 454 56.4
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 8.2e-128 461.1 461 56.2
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 8.2e-128 461.1 463 56.2
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 1.1e-127 460.7 452 56.0
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 2.4e-127 459.5 447 55.3
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 5.3e-127 458.4 441 55.8
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 9.0e-127 457.6 454 55.7
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 1.2e-126 457.2 456 55.5
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 1.5e-126 456.8 452 56.0
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 1.5e-126 456.8 452 56.0
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 1.5e-126 456.8 477 54.1
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 1.5e-126 456.8 459 56.2
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 5.9e-126 454.9 457 54.3
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 1.7e-125 453.4 500 51.6
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 3.8e-125 452.2 442 56.8
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 6.5e-125 451.4 452 55.3
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 6.5e-125 451.4 461 56.0
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 4.2e-124 448.7 459 54.9
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 4.2e-124 448.7 455 52.1
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 5.5e-124 448.4 452 55.1
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 7.2e-124 448.0 459 54.2
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 9.4e-124 447.6 477 53.9
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 6.1e-123 444.9 388 61.1
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 1.4e-122 443.7 456 52.6
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 8.8e-122 441.0 435 56.6
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 1.4e-119 433.7 438 54.1
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 1.2e-118 430.6 456 52.2
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 2.7e-115 419.5 399 56.1
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 9.1e-111 404.4 459 50.1
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 1.3e-109 400.6 378 56.6
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 6.5e-109 398.3 408 55.4
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 3.2e-108 396.0 463 48.6
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 5.5e-108 395.2 430 49.8
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 2.1e-107 393.3 420 51.2
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 1.1e-103 380.9 418 53.1
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 2.8e-96 356.3 386 52.3
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 3.4e-81 306.2 315 52.7
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 9.8e-81 304.7 400 44.5
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 2.4e-79 300.1 451 40.8
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 1.9e-76 290.4 409 43.0
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 1.9e-76 290.4 444 40.3
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 2.8e-75 286.6 317 53.0
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 2.6e-73 280.0 403 41.4
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 4.7e-67 259.2 409 38.6
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 3.7e-64 249.6 171 70.2
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 3.2e-47 193.4 157 61.8
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 6.0e-46 189.1 180 57.8
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 6.0e-46 189.1 180 57.8
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 4.0e-26 123.2 185 42.7
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 1.0e-16 92.0 67 71.6
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 1.3e-08 65.1 37 75.7


User provided reference genes

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