Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 1.6e-280 968.8 492 100.0
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 7.2e-156 554.7 503 60.8
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 4.7e-139 498.8 494 57.9
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 9.6e-116 421.4 487 52.0
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.5e-113 414.1 486 51.6
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 1.9e-87 327.4 520 43.3
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.7e-75 287.7 503 41.9
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.8e-75 287.0 503 41.9
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 4.8e-75 286.2 527 39.5
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 4.1e-74 283.1 506 40.1
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.0e-72 278.5 499 40.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.3e-72 278.1 508 40.6
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 2.2e-72 277.3 502 40.0
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.9e-71 274.2 516 38.6
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.2e-71 273.1 516 39.0
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 3.9e-69 266.5 512 39.1
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 3.9e-69 266.5 490 38.8
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 6.7e-69 265.8 512 38.5
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 8.8e-69 265.4 506 38.3
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 2.0e-68 264.2 510 39.6
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 9.7e-68 261.9 501 39.3
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 3.7e-67 260.0 492 40.0
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 6.3e-67 259.2 495 39.4
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 2.4e-66 257.3 520 37.1
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 5.3e-66 256.1 488 38.7
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 5.3e-66 256.1 514 39.1
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 1.5e-65 254.6 447 39.1
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 2.0e-65 254.2 502 36.9
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 4.5e-65 253.1 506 37.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.0e-64 251.9 520 35.8
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 1.0e-64 251.9 513 37.8
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.3e-64 251.5 487 38.6
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.3e-64 251.5 528 37.3
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.7e-64 251.1 501 38.1
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 5.0e-64 249.6 485 40.2
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.4e-61 241.5 499 36.5
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 5.2e-61 239.6 489 38.7
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 3.3e-60 236.9 448 38.6
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.7e-59 233.4 538 34.2
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 1.4e-58 231.5 501 36.1
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 3.1e-58 230.3 481 37.0
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 7.0e-58 229.2 512 36.9
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 9.1e-58 228.8 494 35.6
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 2.0e-57 227.6 513 36.6
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 4.5e-57 226.5 521 34.5
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 5.9e-57 226.1 522 36.6
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 5.9e-57 226.1 503 35.6
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 5.9e-57 226.1 519 36.2
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 1.7e-56 224.6 457 37.2
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 2.9e-56 223.8 524 34.7
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 2.9e-56 223.8 508 35.8
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 1.5e-55 221.5 490 36.5
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 5.5e-55 219.5 458 36.0
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.1e-54 217.6 445 37.5
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.1e-54 217.6 445 37.5
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 2.7e-54 217.2 475 37.5
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 8.8e-53 212.2 448 36.6
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 2.0e-52 211.1 458 34.7
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 2.6e-52 210.7 529 33.5
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 5.7e-52 209.5 537 32.6
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 7.5e-52 209.1 447 36.0
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 3.7e-51 206.8 484 35.3
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 8.3e-51 205.7 499 36.5
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 1.4e-50 204.9 438 37.4
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 1.8e-50 204.5 507 34.9
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 2.4e-50 204.1 483 35.4
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 2.4e-50 204.1 551 32.7
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 3.1e-50 203.8 468 34.4
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 4.1e-50 203.4 488 31.8
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 9.1e-50 202.2 471 34.4
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.2e-49 201.8 495 34.1
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 2.0e-49 201.1 418 38.0
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 4.5e-49 199.9 442 38.5
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.0e-48 198.7 528 32.0
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.8e-48 196.8 487 34.5
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.8e-48 196.8 492 35.4
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 1.9e-47 194.5 475 34.3
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 2.5e-47 194.1 554 32.5
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 4.2e-47 193.4 490 34.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 4.2e-47 193.4 515 33.6
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 5.5e-47 193.0 448 34.4
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 5.5e-47 193.0 448 34.4
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 5.5e-47 193.0 448 34.4
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 9.4e-47 192.2 541 32.2
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 3.6e-46 190.3 501 32.7
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 6.1e-46 189.5 480 33.1
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 6.1e-46 189.5 499 33.5
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 4.0e-45 186.8 447 32.7
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 4.0e-45 186.8 417 34.3
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 5.2e-45 186.4 550 30.9
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 6.8e-45 186.0 488 35.0
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 1.2e-44 185.3 449 33.6
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 4.4e-44 183.3 488 32.6
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 5.7e-44 183.0 476 32.8
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 9.8e-44 182.2 441 34.0
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 2.8e-43 180.6 459 33.1
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 4.9e-43 179.9 458 32.3
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 2.7e-41 174.1 476 33.2
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 2.1e-38 164.5 435 35.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.9e-35 153.3 483 33.1
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.9e-32 143.7 381 32.0
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 6.2e-30 136.3 496 30.8
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.3e-29 134.4 447 28.6
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 4.0e-29 133.7 488 27.7
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 4.1e-26 123.6 261 35.6
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 4.7e-22 110.2 246 31.7
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 4.9e-19 100.1 393 28.2
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 8.3e-19 99.4 227 31.3
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 2.3e-16 91.3 502 25.1
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 6.6e-16 89.7 133 42.9
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.3e-15 87.4 193 35.8
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 2.8e-14 84.3 198 38.9
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.1e-13 82.4 164 30.5
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.1e-06 58.2 77 37.7
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.7e-06 57.0 162 31.5
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 4.7e-06 57.0 54 55.6
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 4.7e-06 57.0 54 55.6


User provided reference genes

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