Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 2.4e-107 392.1 193 100.0
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 5.2e-49 198.4 166 60.2
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 3.4e-48 195.7 164 59.8
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 5.7e-48 194.9 160 61.9
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 1.3e-47 193.7 164 59.1
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.3e-44 183.7 159 59.1
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.7e-42 176.0 162 56.2
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 4.7e-42 175.3 168 53.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.0e-41 174.1 164 54.9
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 4.0e-41 172.2 178 53.9
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 6.8e-41 171.4 165 54.5
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 2.0e-40 169.9 178 52.8
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 4.4e-40 168.7 164 55.5
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 4.4e-40 168.7 174 50.6
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 5.7e-40 168.3 167 52.1
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 5.7e-40 168.3 107 72.0
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 7.5e-40 167.9 167 52.7
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 9.8e-40 167.5 173 52.6
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 1.3e-39 167.2 165 51.5
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.7e-39 166.8 128 63.3
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.7e-39 166.8 170 50.6
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.2e-39 166.4 162 54.9
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 2.2e-39 166.4 158 53.2
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.8e-39 166.0 158 55.7
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 2.8e-39 166.0 170 52.9
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.8e-39 166.0 165 55.2
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 3.7e-39 165.6 164 53.0
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 6.3e-39 164.9 184 49.5
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 6.3e-39 164.9 164 54.9
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 8.3e-39 164.5 167 48.5
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 1.4e-38 163.7 184 52.2
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.4e-38 163.7 163 52.8
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 1.8e-38 163.3 158 52.5
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.8e-38 163.3 157 53.5
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 4.1e-38 162.2 173 51.4
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.1e-38 162.2 174 51.7
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 4.1e-38 162.2 95 78.9
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 4.1e-38 162.2 167 48.5
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 5.4e-38 161.8 134 59.0
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 5.4e-38 161.8 167 51.5
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 5.4e-38 161.8 167 52.7
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 5.4e-38 161.8 178 47.8
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 7.0e-38 161.4 177 52.5
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 9.1e-38 161.0 168 51.2
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.2e-37 160.6 166 53.0
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.2e-37 160.6 161 52.8
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.2e-37 160.6 161 52.8
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.2e-37 160.6 161 52.8
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.6e-37 160.2 167 52.1
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 1.6e-37 160.2 103 69.9
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-37 160.2 147 57.1
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 3.5e-37 159.1 161 52.2
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 3.5e-37 159.1 129 58.1
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 4.5e-37 158.7 169 48.5
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 4.5e-37 158.7 167 46.1
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 5.9e-37 158.3 103 68.9
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 5.9e-37 158.3 138 58.0
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 5.9e-37 158.3 145 55.2
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 5.9e-37 158.3 175 52.0
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 7.7e-37 157.9 104 68.3
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 7.7e-37 157.9 159 51.6
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.0e-36 157.5 173 49.1
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.7e-36 156.8 97 71.1
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 2.3e-36 156.4 167 50.3
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 2.9e-36 156.0 121 63.6
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 3.8e-36 155.6 129 59.7
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 5.0e-36 155.2 130 56.9
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 5.0e-36 155.2 130 56.9
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 6.6e-36 154.8 121 58.7
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 6.6e-36 154.8 126 61.9
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 6.6e-36 154.8 141 56.0
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 6.6e-36 154.8 96 71.9
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 6.6e-36 154.8 97 71.1
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.1e-35 154.1 93 75.3
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.1e-35 154.1 169 48.5
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 2.5e-35 152.9 147 52.4
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 2.5e-35 152.9 126 61.1
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 2.5e-35 152.9 149 51.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.3e-35 152.5 98 70.4
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 4.2e-35 152.1 146 56.2
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 4.2e-35 152.1 134 57.5
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 4.2e-35 152.1 135 56.3
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 4.2e-35 152.1 109 63.3
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 5.5e-35 151.8 145 55.9
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 5.5e-35 151.8 145 55.9
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 5.5e-35 151.8 130 55.4
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 5.5e-35 151.8 158 49.4
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 5.5e-35 151.8 149 51.7
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 7.2e-35 151.4 169 46.7
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.6e-34 150.2 140 52.9
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 2.1e-34 149.8 145 55.2
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.1e-34 149.8 149 51.7
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 2.8e-34 149.4 123 56.9
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 2.8e-34 149.4 170 45.9
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 3.6e-34 149.1 147 51.0
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 3.6e-34 149.1 120 58.3
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 4.7e-34 148.7 93 71.0
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 5.2e-33 145.2 121 57.9
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 6.8e-33 144.8 82 80.5
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 2.0e-32 143.3 179 49.7
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 4.4e-32 142.1 98 64.3
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.4e-32 142.1 98 64.3
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.4e-32 142.1 98 64.3
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 4.4e-32 142.1 162 47.5
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 5.7e-32 141.7 170 46.5
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.5e-32 141.4 98 65.3
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.8e-32 141.0 98 64.3
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.8e-31 139.4 98 63.3
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 3.5e-29 132.5 149 47.7
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 7.8e-29 131.3 176 43.2
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.0e-28 131.0 100 58.0
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.7e-28 130.2 132 50.8
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 3.9e-28 129.0 98 63.3
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.2e-26 124.0 150 47.3
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.6e-26 123.6 147 44.9
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.8e-25 120.2 138 42.8
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 5.2e-25 118.6 122 47.5
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.5e-24 117.1 105 53.3
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 6.4e-23 111.7 71 64.8
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 7.8e-21 104.8 72 62.5
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 8.6e-20 101.3 88 53.4
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.3e-19 99.0 95 49.5
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 4.7e-18 95.5 88 52.3
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 6.2e-18 95.1 123 43.9
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.1e-18 94.7 96 49.0
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 3.9e-12 75.9 63 52.4
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.1e-12 75.5 96 43.8
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 4.3e-11 72.4 106 40.6
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 4.3e-11 72.4 86 45.3
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 9.5e-11 71.2 113 35.4
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.7e-10 68.9 83 38.6
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.4e-09 67.4 72 50.0
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.8e-09 67.0 78 44.9
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.3e-09 66.6 87 37.9
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.2e-08 64.3 87 47.1
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 3.4e-08 62.8 105 34.3
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 4.1e-06 55.8 82 35.4
BcaC04g21768 Brassica carinata HOM05D002826 ORTHO05D003105 5.4e-06 55.5 55 38.2
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 5.4e-06 55.5 49 42.9
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 5.4e-06 55.5 49 44.9
PGR142G1133 Punica granatum HOM05D002826 ORTHO05D003105 5.4e-06 55.5 55 40.0
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 5.4e-06 55.5 49 44.9
FvH4_4g28420 Fragaria vesca HOM05D002826 ORTHO05D003105 7.1e-06 55.1 87 34.5
FAN12G4176 Fragaria x ananassa HOM05D002826 ORTHO05D003105 7.1e-06 55.1 87 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1913 Anthoceros agrestis HOM05D002826 ORTHO05D003105 9.2e-06 54.7 59 39.0
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 9.2e-06 54.7 49 42.9
SalBow8G2187 Salvia bowleyana HOM05D002826 ORTHO05D003105 9.2e-06 54.7 49 42.9
SGA_v2.0_scaffold275G46539 Striga asiatica HOM05D002826 ORTHO05D003105 9.2e-06 54.7 55 41.8


User provided reference genes

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