Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.1e-149 533.5 299 100.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.6e-102 376.7 299 74.9
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 3.8e-91 339.0 283 71.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.1e-90 337.4 286 72.0
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.2e-90 335.5 286 71.7
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.0e-83 312.0 299 63.2
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.1e-82 310.8 295 62.4
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.5e-82 309.7 296 61.8
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.2e-82 308.1 293 63.1
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.6e-81 307.0 293 62.8
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 2.1e-81 306.6 295 63.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.3e-80 303.1 297 62.3
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 3.0e-80 302.8 255 63.1
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.9e-80 302.4 297 63.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 8.8e-80 301.2 299 58.2
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-79 300.4 298 63.8
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.5e-79 300.4 295 61.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 3.3e-79 299.3 298 63.1
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 9.7e-79 297.7 297 57.9
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 9.7e-79 297.7 293 62.5
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.3e-78 297.4 295 60.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.3e-78 297.4 295 60.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.3e-78 297.4 295 62.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.7e-78 297.0 297 61.6
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.2e-78 296.6 294 62.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 6.3e-78 295.0 298 58.7
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 6.3e-78 295.0 295 62.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 6.3e-78 295.0 295 58.6
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 8.2e-78 294.7 288 62.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 8.2e-78 294.7 294 60.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 8.2e-78 294.7 293 62.5
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 8.2e-78 294.7 288 64.2
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.4e-77 293.9 294 58.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.4e-77 293.9 297 59.6
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.8e-77 293.5 294 60.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.8e-77 293.5 293 61.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 4.1e-77 292.4 294 62.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 5.3e-77 292.0 297 60.3
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 9.1e-77 291.2 297 62.0
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.5e-76 290.4 287 61.3
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.5e-76 288.9 298 61.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.9e-76 288.5 297 62.3
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 5.9e-76 288.5 298 62.4
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.9e-76 288.5 298 62.1
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.0e-75 287.7 295 63.1
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.3e-75 287.3 293 61.4
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.2e-75 286.6 295 60.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 2.2e-75 286.6 295 59.3
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.2e-75 286.6 293 62.5
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 2.9e-75 286.2 299 59.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.9e-75 286.2 295 60.3
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 5.0e-75 285.4 285 58.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.0e-75 285.4 297 58.2
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 6.5e-75 285.0 297 61.3
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 8.5e-75 284.6 297 56.9
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.1e-74 284.3 297 60.3
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.1e-74 284.3 299 60.2
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.1e-74 284.3 295 60.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.9e-74 283.5 297 61.3
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.2e-74 282.7 296 60.8
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 3.2e-74 282.7 297 57.9
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.5e-74 282.0 295 59.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.4e-74 281.2 291 58.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 9.4e-74 281.2 296 60.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.2e-73 280.8 299 58.5
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.1e-73 280.0 298 57.7
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.7e-73 279.6 296 59.5
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.6e-73 279.3 293 57.3
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 4.7e-73 278.9 293 60.1
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 6.1e-73 278.5 295 58.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 8.0e-73 278.1 297 57.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.0e-72 277.7 297 59.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.4e-72 277.3 241 61.4
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.3e-72 276.6 280 61.4
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-72 276.6 289 59.9
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 3.0e-72 276.2 282 61.0
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 6.7e-72 275.0 289 60.2
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 6.7e-72 275.0 289 57.1
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.3e-70 270.8 287 59.2
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.8e-70 268.9 298 57.0
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.8e-69 266.9 295 55.9
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.1e-69 266.2 287 56.4
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 5.3e-69 265.4 294 56.1
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 4.5e-68 262.3 256 54.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 7.7e-68 261.5 280 58.9
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.9e-67 259.6 280 57.5
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.9e-67 259.6 290 54.8
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 3.8e-67 259.2 314 55.1
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 5.0e-67 258.8 303 55.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 5.0e-67 258.8 289 58.5
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 6.5e-67 258.5 232 58.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 8.5e-67 258.1 280 58.9
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-66 257.3 280 58.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 4.2e-66 255.8 291 56.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 4.2e-66 255.8 292 56.8
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 7.2e-66 255.0 291 55.7
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 9.4e-66 254.6 390 43.8
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 8.0e-65 251.5 297 55.2
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.4e-64 250.8 273 52.0
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.8e-64 250.4 297 55.2
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.8e-64 250.4 291 54.0
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 4.0e-64 249.2 295 53.6
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 5.2e-64 248.8 289 55.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-63 247.7 287 55.4
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-63 246.9 376 47.9
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.3e-62 244.2 290 53.4
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 4.8e-62 242.3 312 52.6
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.8e-61 240.4 257 50.2
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.3e-59 234.2 331 45.9
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 6.5e-59 231.9 293 49.1
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 3.0e-56 223.0 287 53.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 6.8e-56 221.9 158 69.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.4e-55 219.5 294 49.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.1e-53 212.6 290 46.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 9.1e-53 211.5 288 50.3
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.9e-52 208.8 296 47.0
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-51 208.0 194 57.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.9e-50 203.8 288 50.7
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.8e-48 195.3 245 47.8
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.4e-45 186.8 285 44.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 5.9e-44 182.2 291 45.7
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.7e-43 180.6 127 69.3
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-42 177.9 174 62.6
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.1e-42 177.9 197 49.7
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 5.6e-42 175.6 150 74.7
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.7e-41 172.6 188 52.1
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-37 161.0 176 51.7
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.2e-36 157.9 134 61.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 7.3e-34 148.7 181 48.1
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.6e-33 147.5 198 54.5
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 3.6e-33 146.4 256 40.2
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 4.7e-33 146.0 162 50.6
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.6e-31 140.2 383 37.6
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.1e-28 130.6 265 33.6
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 3.0e-27 126.7 118 76.3
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-24 117.9 113 69.9
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 7.5e-23 112.1 265 31.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.3e-22 111.3 255 32.5
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 7.8e-20 102.1 65 73.8
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 4.0e-16 89.7 132 40.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.7e-12 77.0 112 43.8
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 3.9e-11 73.2 147 32.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.5e-10 70.5 119 36.1
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 9.6e-10 68.6 38 81.6
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.6e-07 60.5 82 54.9
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.4e-07 60.1 34 76.5
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.8e-06 56.6 158 30.4


User provided reference genes

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