Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 3.3e-86 321.6 159 100.0
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.5e-65 253.1 154 81.8
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 7.2e-65 250.8 154 80.5
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 1.2e-56 223.4 189 61.4
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 1.2e-54 216.9 154 67.5
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 1.3e-50 203.4 158 66.5
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 1.5e-49 199.9 156 65.4
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 1.2e-48 196.8 155 64.5
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 2.1e-48 196.1 159 65.4
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 4.7e-48 194.9 152 67.1
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 6.2e-48 194.5 154 66.9
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 6.2e-48 194.5 149 62.4
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 1.8e-47 193.0 156 63.5
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 4.0e-47 191.8 160 63.8
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.6e-46 189.1 159 62.9
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 3.4e-46 188.7 143 66.4
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 7.5e-46 187.6 157 65.0
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 7.5e-46 187.6 150 60.7
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 9.8e-46 187.2 159 60.4
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 1.3e-45 186.8 157 63.7
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 1.3e-45 186.8 155 61.3
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 2.9e-45 185.7 163 62.6
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 6.4e-45 184.5 158 62.0
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 3.2e-44 182.2 161 62.1
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 4.1e-44 181.8 156 60.9
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 7.0e-44 181.0 153 63.4
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 9.2e-44 180.6 155 60.6
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 9.2e-44 180.6 147 60.5
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 1.2e-43 180.3 156 60.3
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 1.6e-43 179.9 155 58.1
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 2.0e-43 179.5 155 59.4
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 2.0e-43 179.5 144 63.9
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 2.7e-43 179.1 159 61.0
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 3.5e-43 178.7 164 60.4
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 6.0e-43 177.9 166 59.6
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 6.0e-43 177.9 164 59.8
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 7.8e-43 177.6 168 58.3
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 7.8e-43 177.6 169 59.2
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 1.3e-42 176.8 156 61.5
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 3.0e-42 175.6 165 59.4
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 6.6e-42 174.5 166 58.4
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 6.6e-42 174.5 164 57.9
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 1.5e-41 173.3 167 58.1
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 7.3e-41 171.0 155 57.4
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 7.3e-41 171.0 155 57.4
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 7.3e-41 171.0 154 57.8
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 7.3e-41 171.0 144 62.5
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 2.1e-40 169.5 163 58.3
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 2.1e-40 169.5 167 56.9
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 3.6e-40 168.7 152 59.9
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 8.1e-40 167.5 158 57.6
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 1.1e-39 167.2 145 57.9
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 2.3e-39 166.0 153 58.8
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 3.1e-39 165.6 152 52.0
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 3.1e-39 165.6 148 56.8
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 5.2e-39 164.9 143 58.7
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 5.2e-39 164.9 145 57.9
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 8.9e-39 164.1 201 50.2
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 2.9e-37 159.1 156 52.6
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 6.4e-37 157.9 157 51.6
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 1.1e-36 157.1 168 51.2
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 1.1e-36 157.1 164 56.1
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 1.9e-36 156.4 154 54.5
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 2.4e-36 156.0 142 55.6
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 4.1e-36 155.2 158 53.8
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 2.3e-34 149.4 147 53.7
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 2.3e-34 149.4 147 55.1
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 3.0e-34 149.1 149 53.7
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 3.0e-34 149.1 151 53.0
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 3.9e-34 148.7 150 53.3
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 3.9e-34 148.7 150 53.3
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 6.6e-34 147.9 143 54.5
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 6.6e-34 147.9 143 54.5
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 6.6e-34 147.9 143 54.5
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 6.6e-34 147.9 148 54.1
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 1.1e-33 147.1 156 51.3
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 1.1e-33 147.1 148 50.0
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 2.5e-33 146.0 150 51.3
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 2.5e-33 146.0 147 52.4
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 3.3e-33 145.6 157 51.0
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 3.6e-32 142.1 153 50.3
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 3.6e-32 142.1 155 51.0
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 4.7e-32 141.7 126 57.9
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 3.1e-31 139.0 147 52.4
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 3.4e-30 135.6 133 49.6
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 1.9e-28 129.8 142 46.5
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 4.1e-28 128.6 114 54.4
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 7.1e-28 127.9 96 63.5
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 1.6e-27 126.7 142 45.8
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 2.1e-27 126.3 142 45.8
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 1.5e-25 120.2 160 42.5
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 4.9e-21 105.1 80 63.8
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 6.4e-21 104.8 119 52.9
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 2.4e-20 102.8 91 56.0
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 5.1e-18 95.1 86 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 7.3e-17 91.3 138 37.0
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 9.6e-17 90.9 105 51.4
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 2.4e-15 86.3 103 47.6
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 6.9e-15 84.7 66 62.1
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 1.9e-12 76.6 97 46.4
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 2.7e-11 72.8 53 62.3
Actinidia07176 Actinidia chinensis HOM05D007495 ORTHO05D009552 9.6e-09 64.3 42 69.0
arahy.Tifrunner.gnm1.ann1.U22N6I Arachis hypogaea HOM05D001167 ORTHO05D014890 6.2e-08 61.6 35 71.4


User provided reference genes

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