Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 7.6e-68 260.4 133 100.0
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.0e-40 170.2 129 72.1
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.2e-36 156.8 130 63.1
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.3e-35 153.3 134 58.2
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.8e-35 151.8 134 58.2
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.9e-26 122.9 140 48.6
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.5e-26 122.5 133 52.6
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 3.2e-26 122.1 135 51.1
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 9.4e-26 120.6 133 51.9
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.6e-25 119.8 125 48.8
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 2.1e-25 119.4 134 51.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.1e-25 117.9 129 49.6
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 6.1e-25 117.9 122 49.2
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.4e-24 116.7 126 50.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.0e-24 115.5 133 47.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.0e-24 115.5 137 51.1
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.0e-24 115.5 130 46.2
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 4.0e-24 115.2 130 46.2
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 6.8e-24 114.4 130 45.4
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.8e-24 114.4 130 45.4
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.8e-24 114.4 134 50.7
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 6.8e-24 114.4 125 47.2
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 6.8e-24 114.4 134 46.3
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.2e-23 113.6 130 47.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-23 113.6 130 45.4
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.2e-23 113.6 133 48.9
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.2e-23 113.6 121 51.2
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.5e-23 113.2 135 48.1
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-23 112.8 130 45.4
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.4e-23 111.7 126 48.4
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.7e-23 111.3 130 44.6
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 9.8e-23 110.5 125 44.8
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.3e-22 110.2 126 48.4
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.2e-22 109.4 132 45.5
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.2e-22 109.4 129 49.6
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.7e-22 108.6 130 47.7
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 6.3e-22 107.8 123 45.5
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 8.3e-22 107.5 133 47.4
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.1e-21 107.1 119 47.9
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.1e-21 107.1 125 44.8
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.1e-21 107.1 133 44.4
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-21 106.7 130 47.7
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.8e-21 106.3 124 49.2
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.4e-21 105.9 129 48.1
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.1e-21 105.5 129 42.6
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-21 105.5 130 46.2
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 3.1e-21 105.5 131 48.1
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 4.1e-21 105.1 123 45.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 5.4e-21 104.8 131 47.3
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 5.4e-21 104.8 127 45.7
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 5.4e-21 104.8 127 44.1
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.2e-20 103.6 136 43.4
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-20 103.6 134 43.3
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.6e-20 103.2 130 48.5
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.0e-20 102.8 128 44.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.5e-20 102.1 134 42.5
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 3.5e-20 102.1 133 41.4
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.5e-20 102.1 123 43.1
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 3.5e-20 102.1 128 43.0
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.5e-20 101.7 124 48.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.0e-19 100.5 134 41.8
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.3e-19 100.1 137 43.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.3e-19 99.4 128 43.8
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.9e-19 99.0 133 42.9
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 3.8e-19 98.6 127 44.9
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.8e-19 98.6 132 40.9
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 3.8e-19 98.6 130 43.1
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.8e-19 98.6 135 43.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 5.0e-19 98.2 129 46.5
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 5.0e-19 98.2 125 44.8
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 8.6e-19 97.4 128 44.5
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.1e-18 97.1 139 44.6
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.9e-18 96.3 136 44.1
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 2.5e-18 95.9 132 40.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.3e-18 95.5 142 38.0
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 2.8e-17 92.4 101 51.5
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 6.1e-17 91.3 137 38.7
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 8.0e-17 90.9 134 41.0
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 6.8e-16 87.8 143 39.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 8.9e-16 87.4 105 49.5
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 8.9e-16 87.4 109 50.5
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 8.9e-16 87.4 143 39.9
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.0e-15 86.3 128 41.4
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 4.4e-15 85.1 133 39.8
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 7.5e-15 84.3 117 47.9
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 9.8e-15 84.0 106 42.5
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.3e-14 83.6 109 48.6
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.7e-14 83.2 116 46.6
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.2e-14 82.8 115 47.0
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.8e-14 82.4 98 44.9
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 3.7e-14 82.0 134 38.1
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 8.3e-14 80.9 104 49.0
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.1e-13 80.5 111 45.0
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.4e-13 80.1 107 45.8
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.4e-13 80.1 107 45.8
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.2e-13 79.0 116 44.0
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 7.0e-13 77.8 110 44.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 7.0e-13 77.8 110 44.5
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.2e-13 77.4 116 43.1
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.2e-12 77.0 109 46.8
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.2e-12 77.0 104 47.1
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.2e-12 77.0 104 47.1
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.2e-12 77.0 139 37.4
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.6e-12 76.6 104 46.2
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.7e-12 75.9 138 37.7
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 5.9e-12 74.7 120 40.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 7.8e-12 74.3 124 34.7
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.3e-11 72.8 144 36.8
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 3.9e-11 72.0 112 42.9
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.9e-11 72.0 136 38.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.9e-11 72.0 126 35.7
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 3.9e-11 72.0 137 33.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 3.9e-11 72.0 137 33.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 5.0e-11 71.6 110 42.7
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 5.0e-11 71.6 132 40.9
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.6e-11 71.2 139 34.5
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.5e-10 70.1 98 46.9
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 2.1e-09 66.2 119 37.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.1e-09 64.7 106 40.6
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.0e-08 63.9 118 33.9
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 6.8e-08 61.2 135 37.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 6.8e-08 61.2 135 37.8
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 8.9e-08 60.8 134 35.8
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 2.0e-07 59.7 129 34.1
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 2.0e-07 59.7 84 45.2
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 7.5e-07 57.8 127 29.1
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 9.8e-07 57.4 128 33.6
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.7e-06 56.6 142 33.8
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.2e-06 56.2 140 31.4


User provided reference genes

Program Settings