Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.0e-151 540.0 268 100.0
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.6e-75 286.2 240 65.4
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 5.1e-63 245.4 201 68.7
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 4.3e-62 242.3 164 75.6
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.3e-58 230.7 166 71.7
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.3e-58 230.7 144 79.2
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 2.2e-58 229.9 164 72.0
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 3.8e-58 229.2 160 73.1
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.0e-58 228.8 158 72.2
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 8.5e-58 228.0 157 74.5
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.4e-57 227.3 156 74.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.9e-57 226.9 224 58.0
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.9e-57 226.9 148 78.4
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.5e-57 226.5 154 74.0
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.2e-57 226.1 146 77.4
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.2e-57 226.1 168 68.5
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 3.2e-57 226.1 197 59.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 7.2e-57 224.9 222 57.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.2e-56 224.2 151 75.5
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.6e-56 223.8 143 76.9
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.1e-56 223.4 178 66.3
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.7e-56 223.0 149 76.5
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.6e-56 222.6 151 74.8
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.6e-56 222.6 151 74.8
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.6e-56 222.6 151 74.8
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.6e-56 222.6 188 62.8
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.1e-56 221.9 151 74.8
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 6.1e-56 221.9 166 68.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 7.9e-56 221.5 170 66.5
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 7.9e-56 221.5 201 59.7
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.0e-55 221.1 159 69.8
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.4e-55 220.7 219 56.6
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.4e-55 220.7 154 70.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.8e-55 220.3 149 73.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.3e-55 219.9 149 74.5
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 2.3e-55 219.9 149 75.2
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.9e-55 219.2 169 68.6
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.9e-55 219.2 146 72.6
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 3.9e-55 219.2 200 59.0
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 6.7e-55 218.4 164 68.9
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-54 217.6 175 64.6
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.1e-54 217.6 162 67.9
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.5e-54 217.2 149 73.8
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.3e-54 215.7 153 71.9
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 4.3e-54 215.7 180 63.3
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 7.4e-54 214.9 154 70.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 9.7e-54 214.5 158 69.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.7e-54 214.5 175 64.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.7e-54 214.5 149 73.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.7e-53 213.8 193 58.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.2e-53 213.4 144 70.8
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.2e-53 213.4 156 69.2
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.8e-53 213.0 197 59.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 4.8e-53 212.2 245 50.6
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 8.2e-53 211.5 173 63.0
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.1e-52 211.1 143 67.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.1e-52 211.1 184 61.4
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.8e-52 210.3 201 58.2
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.4e-52 209.9 154 70.1
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 2.4e-52 209.9 153 69.3
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.1e-52 209.5 138 73.9
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.5e-51 205.7 173 63.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 5.9e-51 205.3 168 61.9
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 5.9e-51 205.3 175 62.9
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 7.7e-51 204.9 287 46.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 2.9e-50 203.0 142 68.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 5.0e-50 202.2 194 58.8
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 8.5e-50 201.4 144 72.2
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.5e-49 199.9 152 67.1
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 4.2e-49 199.1 139 72.7
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-48 197.2 155 65.8
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.1e-48 196.8 144 69.4
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 4.7e-48 195.7 182 58.8
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 6.1e-48 195.3 142 65.5
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 4.4e-46 189.1 178 57.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 9.7e-46 188.0 108 84.3
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.3e-45 187.6 111 83.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.3e-45 187.6 148 63.5
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.7e-45 187.2 113 81.4
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 4.8e-45 185.7 110 83.6
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.3e-45 185.3 153 60.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 8.2e-45 184.9 158 59.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.4e-44 183.3 155 57.4
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.1e-44 183.0 153 60.8
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.1e-44 182.6 157 59.2
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 4.1e-44 182.6 155 59.4
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 5.3e-44 182.2 141 63.1
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.3e-44 182.2 126 73.0
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 9.1e-44 181.4 143 65.7
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-43 181.0 168 55.4
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.7e-42 177.2 122 73.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.7e-42 177.2 169 55.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.2e-42 176.8 169 54.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.9e-42 176.4 116 72.4
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.8e-42 176.0 114 74.6
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 5.0e-42 175.6 164 57.3
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 5.0e-42 175.6 142 60.6
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 8.5e-42 174.9 108 80.6
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.4e-41 174.1 108 78.7
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.4e-41 174.1 156 55.8
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.9e-41 173.7 108 79.6
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.2e-41 172.9 146 61.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 5.5e-41 172.2 112 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.2e-40 171.0 159 57.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 2.7e-40 169.9 108 75.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.7e-40 169.9 110 76.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.1e-40 168.7 149 57.0
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 8.0e-40 168.3 107 79.4
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.0e-39 167.9 110 74.5
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.8e-39 167.2 163 57.1
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 8.8e-39 164.9 151 59.6
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 5.7e-38 162.2 121 67.8
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.3e-37 161.0 109 71.6
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.3e-37 161.0 122 63.9
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.3e-37 161.0 120 65.0
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 2.2e-37 160.2 113 69.0
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 6.3e-37 158.7 126 62.7
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.4e-36 157.5 149 52.3
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.4e-36 157.5 148 52.7
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 5.3e-36 155.6 160 52.5
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.2e-34 150.2 144 56.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 2.9e-34 149.8 149 54.4
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.1e-32 143.7 203 48.8
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 6.1e-32 142.1 159 53.5
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.3e-31 140.2 140 58.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-30 137.9 74 86.5
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.6e-30 136.7 113 57.5
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 5.7e-30 135.6 141 55.3
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.7e-30 135.6 94 68.1
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 7.5e-30 135.2 124 53.2
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 3.1e-28 129.8 182 46.7
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.5e-25 119.0 70 82.9
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 2.3e-23 113.6 58 86.2
Ah.06g186580 Amaranthus hybridus HOM05D012836 ORTHO05D015817 3.0e-23 113.2 54 92.6
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.5e-22 110.9 79 70.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 2.0e-22 110.5 108 54.6
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.0e-22 110.5 111 58.6
Ah.05g178360 Amaranthus hybridus HOM05D012836 ORTHO05D015817 2.6e-22 110.2 54 92.6
Ah.11g040230 Amaranthus hybridus HOM05D012836 ORTHO05D015817 3.4e-22 109.8 53 92.5
Ah.02g111940 Amaranthus hybridus HOM05D012836 ORTHO05D015817 9.8e-22 108.2 53 92.5
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.7e-21 107.5 54 88.9
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.8e-21 106.7 71 73.2
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.8e-21 105.9 135 48.9
Ah.06g188420 Amaranthus hybridus HOM05D012836 ORTHO05D015817 8.3e-21 105.1 55 85.5
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-20 104.8 155 40.6
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.4e-20 103.6 53 88.7
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.1e-20 102.8 68 64.7
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.4e-20 102.4 67 73.1
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.6e-19 100.9 68 69.1
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.0e-18 95.9 84 56.0
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.0e-18 95.9 69 66.7
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 3.3e-17 93.2 116 50.9
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.5e-17 92.4 118 50.0
Ah.12g059420 Amaranthus hybridus HOM05D001153 ORTHO05D000949 2.8e-16 90.1 64 68.8
Ah.13g066200 Amaranthus hybridus HOM05D012836 ORTHO05D006332 1.4e-15 87.8 77 57.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.3e-15 87.0 55 72.7
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 9.8e-14 81.6 108 49.1
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 6.3e-13 79.0 150 34.7
Ah.13g077250 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.1e-12 78.2 52 71.2
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 7.8e-11 72.0 80 51.2
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 5.0e-10 69.3 52 67.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-09 68.2 47 57.4
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.6e-08 64.3 75 46.7
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.0e-07 61.6 36 75.0
Ah.11g039390 Amaranthus hybridus HOM05D000129 ORTHO05D000997 1.8e-07 60.8 28 96.4
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 1.8e-07 60.8 43 62.8
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.3e-07 60.5 36 75.0
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.1e-07 60.1 41 65.9
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 8.9e-07 58.5 36 75.0
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.2e-06 58.2 36 72.2
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.5e-06 57.8 36 69.4
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.5e-06 57.8 58 56.9
Ah.07g197290 Amaranthus hybridus HOM05D012836 ORTHO05D015817 2.0e-06 57.4 26 92.3
Ah.14g081000 Amaranthus hybridus HOM05D005531 ORTHO05D006332 3.4e-06 56.6 40 65.0
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.4e-06 56.6 36 66.7
Ah.02g127550 Amaranthus hybridus HOM05D012836 ORTHO05D015817 5.8e-06 55.8 26 88.5
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.5e-06 55.5 36 69.4
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 9.8e-06 55.1 36 66.7


User provided reference genes

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