Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 2.4e-99 366.7 416 100.0
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 1.3e-44 184.9 110 81.8
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 6.5e-41 172.6 111 74.8
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 9.8e-37 158.7 103 72.8
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 1.7e-36 157.9 112 67.9
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 8.6e-33 145.6 91 73.6
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 1.2e-31 141.7 111 63.1
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.6e-31 141.4 112 58.9
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 1.6e-31 141.4 111 57.7
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 1.4e-30 138.3 111 56.8
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 1.4e-30 138.3 161 59.0
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 1.4e-30 138.3 111 57.7
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.8e-30 137.9 111 57.7
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.0e-30 137.1 159 59.7
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 3.0e-30 137.1 111 58.6
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.2e-30 136.3 160 58.8
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 6.8e-30 136.0 111 57.7
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 8.9e-30 135.6 111 56.8
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 8.9e-30 135.6 115 55.7
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.2e-29 135.2 111 57.7
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 1.5e-29 134.8 111 56.8
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 2.0e-29 134.4 157 57.3
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.6e-29 134.0 111 54.1
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 3.4e-29 133.7 111 53.2
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 7.5e-29 132.5 111 55.9
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 9.8e-29 132.1 111 56.8
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.3e-28 131.7 111 54.1
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 1.7e-28 131.3 111 53.2
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 1.7e-28 131.3 111 55.0
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.7e-28 131.3 111 55.9
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.7e-28 131.3 112 56.2
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 2.2e-28 131.0 111 55.9
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 2.9e-28 130.6 104 58.7
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.9e-28 130.6 112 56.2
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 2.9e-28 130.6 111 55.9
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 4.9e-28 129.8 153 51.0
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 4.9e-28 129.8 104 58.7
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 6.4e-28 129.4 111 51.4
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 6.4e-28 129.4 106 54.7
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 8.3e-28 129.0 111 52.3
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 8.3e-28 129.0 112 56.2
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 8.3e-28 129.0 112 54.5
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 1.1e-27 128.6 112 53.6
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.1e-27 128.6 111 52.3
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 1.4e-27 128.3 108 55.6
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.4e-27 128.3 104 56.7
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.4e-27 128.3 113 54.9
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.4e-27 128.3 104 57.7
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.4e-27 128.3 111 53.2
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 1.8e-27 127.9 111 52.3
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 1.8e-27 127.9 104 58.7
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 2.4e-27 127.5 105 56.2
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 4.1e-27 126.7 109 55.0
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 4.1e-27 126.7 112 55.4
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 4.1e-27 126.7 112 55.4
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 4.1e-27 126.7 112 55.4
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 4.1e-27 126.7 106 55.7
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 5.4e-27 126.3 107 54.2
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 5.4e-27 126.3 104 56.7
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 5.4e-27 126.3 159 56.0
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 5.4e-27 126.3 106 53.8
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 5.4e-27 126.3 158 52.5
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 5.4e-27 126.3 112 53.6
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 5.4e-27 126.3 106 53.8
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 7.0e-27 125.9 106 53.8
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 9.2e-27 125.6 112 54.5
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 9.2e-27 125.6 112 52.7
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.2e-26 125.2 106 51.9
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 1.2e-26 125.2 150 48.7
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 1.6e-26 124.8 109 54.1
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.6e-26 124.8 108 52.8
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.6e-26 124.8 109 54.1
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.0e-26 124.4 114 50.0
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 2.0e-26 124.4 111 54.1
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 2.0e-26 124.4 106 56.6
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 2.7e-26 124.0 107 54.2
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 3.5e-26 123.6 115 51.3
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.5e-26 123.6 107 50.5
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 4.6e-26 123.2 106 51.9
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 4.6e-26 123.2 111 51.4
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.9e-26 122.9 108 51.9
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 5.9e-26 122.9 108 52.8
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 5.9e-26 122.9 108 52.8
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 5.9e-26 122.9 103 56.3
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 5.9e-26 122.9 112 53.6
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 5.9e-26 122.9 109 47.7
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 7.8e-26 122.5 106 51.9
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 7.8e-26 122.5 104 53.8
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 7.8e-26 122.5 111 51.4
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 7.8e-26 122.5 179 50.3
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 1.0e-25 122.1 104 53.8
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.0e-25 122.1 106 55.7
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 1.0e-25 122.1 109 48.6
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 1.0e-25 122.1 111 46.8
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 1.3e-25 121.7 106 52.8
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 1.3e-25 121.7 106 50.9
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 1.7e-25 121.3 106 50.9
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 2.3e-25 120.9 113 52.2
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 3.0e-25 120.6 108 50.9
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 3.9e-25 120.2 157 51.6
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 3.9e-25 120.2 106 49.1
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 3.9e-25 120.2 114 49.1
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 5.0e-25 119.8 112 48.2
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 5.0e-25 119.8 109 51.4
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 5.0e-25 119.8 153 44.4
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 8.6e-25 119.0 114 50.0
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 8.6e-25 119.0 115 49.6
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 8.6e-25 119.0 112 51.8
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-24 118.6 105 52.4
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 1.9e-24 117.9 103 53.4
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.9e-24 117.9 106 48.1
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 2.5e-24 117.5 111 49.5
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 4.3e-24 116.7 106 51.9
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 4.3e-24 116.7 106 47.2
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 9.5e-24 115.5 107 50.5
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 9.5e-24 115.5 110 48.2
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 9.5e-24 115.5 105 51.4
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 9.5e-24 115.5 155 40.0
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 1.2e-23 115.2 113 52.2
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 1.2e-23 115.2 103 52.4
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 1.6e-23 114.8 118 49.2
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 1.6e-23 114.8 118 49.2
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 1.6e-23 114.8 118 49.2
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 1.6e-23 114.8 118 49.2
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 1.6e-23 114.8 118 49.2
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 2.1e-23 114.4 111 51.4
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 4.7e-23 113.2 110 47.3
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 8.0e-23 112.5 160 53.1
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 8.0e-23 112.5 160 53.1
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 8.0e-23 112.5 160 50.0
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 8.0e-23 112.5 160 53.1
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 8.0e-23 112.5 160 53.1
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 1.1e-22 112.1 110 50.0
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.1e-22 112.1 110 52.7
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 1.8e-22 111.3 115 49.6
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 2.3e-22 110.9 168 45.8
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 2.3e-22 110.9 107 53.3
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 2.3e-22 110.9 106 48.1
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 3.1e-22 110.5 118 47.5
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 4.0e-22 110.2 122 45.9
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.0e-22 110.2 122 45.9
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 4.0e-22 110.2 118 47.5
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 5.2e-22 109.8 118 47.5
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 5.2e-22 109.8 118 47.5
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 6.8e-22 109.4 114 49.1
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 6.8e-22 109.4 113 50.4
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 1.2e-21 108.6 111 51.4
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-21 108.2 106 52.8
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-21 108.2 106 52.8
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-21 108.2 106 52.8
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.4e-21 107.1 109 51.4
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 3.4e-21 107.1 111 48.6
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 4.4e-21 106.7 161 46.0
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 4.4e-21 106.7 106 51.9
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 5.8e-21 106.3 101 48.5
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 8.3e-20 102.4 106 51.9
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.4e-19 101.7 90 53.3
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.4e-19 101.7 143 40.6
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 4.1e-19 100.1 105 47.6
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 1.2e-18 98.6 121 41.3
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 1.6e-18 98.2 112 46.4
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 2.0e-18 97.8 121 41.3
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.0e-17 95.5 108 47.2
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 1.7e-17 94.7 108 45.4
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 3.0e-17 94.0 104 48.1
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 8.6e-17 92.4 103 41.7
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.9e-16 91.3 109 43.1
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 8.9e-14 82.4 105 44.8
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 1.5e-13 81.6 105 43.8
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.2e-10 72.0 108 42.6
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.7e-09 68.2 67 47.8
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 3.0e-09 67.4 113 40.7
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 3.9e-09 67.0 104 40.4
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 1.9e-08 64.7 107 38.3
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.2e-07 62.0 103 36.9
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.1e-07 61.2 107 40.2
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 8.1e-07 59.3 68 47.1
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 1.4e-06 58.5 87 39.1
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.8e-06 58.2 87 35.6
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 2.4e-06 57.8 122 32.0
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.1e-06 57.4 103 33.0
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 6.8e-06 56.2 71 46.5
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 6.8e-06 56.2 71 46.5


User provided reference genes

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