Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1495.3 832 100.0
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1278.1 832 81.1
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1167.5 815 74.5
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 656 89.6
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 0.0e+00 1146.3 656 88.9
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1124.0 847 71.1
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 808 75.1
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1119.8 833 72.7
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1115.5 828 71.6
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 833 70.9
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 822 72.3
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 828 69.3
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 842 71.1
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 841 71.2
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1096.6 842 71.0
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1092.0 834 71.2
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 813 71.1
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 842 68.4
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 825 69.7
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 825 68.7
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 817 70.3
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 834 69.4
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1078.5 824 70.5
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1078.2 846 71.0
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1077.8 827 69.8
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1077.0 830 70.4
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 823 71.6
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 817 69.4
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 5.7e-312 1074.7 837 70.8
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 5.7e-312 1074.3 822 68.7
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 5.7e-312 1074.3 822 68.7
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 5.7e-312 1073.5 824 69.9
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-311 1073.2 834 70.7
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-311 1073.2 834 70.7
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 8.5e-311 1070.1 843 67.9
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 1.1e-310 1069.7 836 70.9
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.5e-310 1069.3 839 70.3
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 1.9e-310 1068.9 833 68.2
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.9e-310 1068.9 822 68.4
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 822 68.4
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 5.6e-310 1067.4 843 69.3
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 5.6e-310 1067.4 829 68.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 7.3e-310 1067.0 858 67.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 1.3e-309 1066.2 840 68.0
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.6e-309 1065.8 822 68.2
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 2.1e-309 1065.4 858 67.7
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 2.8e-309 1065.1 831 71.8
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 3.6e-309 1064.7 829 69.2
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 839 69.5
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 824 69.3
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 813 70.5
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 5.3e-308 1060.8 818 71.9
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 5.8e-307 1057.4 839 69.2
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 7.6e-307 1057.0 839 69.2
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 1.3e-306 1056.2 834 70.1
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 3.8e-306 1054.7 823 67.7
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 6.4e-306 1053.9 839 70.6
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 4.2e-305 1051.2 841 68.3
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 7.1e-305 1050.4 834 69.5
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 790 70.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 4.6e-304 1047.7 839 68.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 4.6e-304 1047.7 838 68.1
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 1.3e-303 1046.2 832 68.0
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 5.1e-303 1044.3 835 69.9
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.7e-303 1043.5 821 69.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 1.9e-302 1042.3 831 69.7
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 2.4e-300 1035.4 827 70.5
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 1.5e-299 1032.7 840 71.5
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 4.5e-299 1031.2 795 67.8
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 3.8e-298 1028.1 840 69.0
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 6.4e-298 1027.3 836 68.8
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 2.4e-297 1025.4 864 69.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 3.2e-297 1025.0 813 72.6
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 3.2e-297 1025.0 833 65.5
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 2.7e-296 1021.9 837 69.3
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 3.5e-296 1021.5 892 63.7
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 3.4e-291 1005.0 927 60.9
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 2.2e-290 1002.3 828 64.7
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 4.2e-289 998.0 908 61.0
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 1.8e-287 992.6 831 64.6
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 1.4e-284 983.0 817 65.2
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 1.8e-284 982.6 818 65.3
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 3.4e-283 978.4 817 65.1
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 3.4e-283 978.4 825 64.0
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 5.9e-283 977.6 816 65.2
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 2.2e-282 975.7 815 64.9
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 5.0e-282 974.5 925 65.2
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 2.5e-281 972.2 815 64.8
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 4.2e-281 971.5 823 64.2
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 4.2e-281 971.5 827 63.8
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 5.5e-281 971.1 815 64.7
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.1e-280 969.1 663 73.0
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 4.6e-280 968.0 813 62.5
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.5e-278 963.0 842 63.3
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 3.1e-276 955.3 822 63.1
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 1.3e-274 949.9 825 62.4
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 3.8e-274 948.3 823 63.4
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 2.5e-273 945.7 769 68.8
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 6.1e-272 941.0 638 75.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 2.6e-270 935.6 822 60.9
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 4.4e-270 934.9 826 62.7
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-267 926.8 661 70.3
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 2.0e-267 926.0 731 66.8
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 3.8e-266 921.8 570 80.4
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.9e-265 919.5 812 66.3
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 2.9e-258 895.6 625 71.7
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.9e-257 892.9 786 58.3
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 5.5e-257 891.3 832 58.4
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.0e-242 844.0 789 55.0
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.0e-242 841.6 788 54.4
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 7.8e-235 817.8 787 53.2
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.3e-226 789.6 842 56.5
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.6e-216 756.9 822 56.9
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 3.6e-216 755.7 796 49.7
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.2e-195 687.6 429 80.0
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.0e-162 576.6 442 69.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 8.2e-160 568.5 482 64.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 3.1e-127 460.3 322 73.3
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.4e-121 439.9 307 70.7
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 2.9e-120 437.2 763 35.8
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 4.9e-120 436.4 270 80.4
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 6.4e-120 436.0 785 36.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.1e-106 392.1 392 56.9
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 3.3e-92 344.0 854 30.2
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 6.2e-83 313.2 367 55.3
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.8e-69 268.5 285 56.8
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-64 252.7 383 46.0
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.3e-56 225.7 143 79.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 5.0e-48 197.2 125 76.8
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.3e-45 188.3 225 51.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.7e-44 183.7 131 67.9
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-42 179.1 142 71.1
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.6e-36 158.3 151 56.3
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.3e-36 157.9 151 56.3
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 5.3e-34 150.6 121 71.1
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.5e-33 147.9 160 55.0
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 4.7e-14 84.3 69 66.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.3e-11 76.3 238 32.8


User provided reference genes

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