Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 2170.6 1099 100.0
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1665.6 1141 74.6
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1558.1 1083 73.8
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1452.2 1141 65.5
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1278.8 1150 57.7
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1255.7 1151 58.9
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1237.6 1155 56.9
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1233.0 1154 56.2
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1228.8 1148 57.7
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1214.1 1140 56.0
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1208.0 1150 56.3
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1203.7 1149 55.8
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1202.2 1133 56.1
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1202.2 1150 56.2
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1201.0 1148 54.7
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1200.3 1187 55.0
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1194.1 1144 55.6
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1189.1 1161 56.2
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1188.3 1157 56.1
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1188.3 1135 56.4
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1185.6 1144 55.0
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1184.9 1143 55.6
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1138 55.4
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1181.8 1143 55.1
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1181.8 1143 55.0
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1180.2 1152 54.3
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1179.9 1152 55.0
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1179.5 1151 54.4
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1140 54.8
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1177.5 1149 54.7
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1177.5 1143 54.9
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1177.2 1142 55.3
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1176.8 1143 55.3
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1175.6 1157 55.5
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1173.7 1145 54.8
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1165.2 1150 54.6
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1164.8 1131 54.7
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1164.4 1150 54.6
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1163.7 1131 54.7
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1159.4 1131 54.6
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1152.9 1146 54.9
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1145.6 1129 53.2
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1141.3 1136 53.5
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1139.4 1134 54.2
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1134.4 1139 53.6
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1134.0 1145 54.1
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1132.9 1139 53.5
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1127.9 1099 54.7
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1125.5 1143 53.5
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1124.8 1143 53.4
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1124.4 1139 53.2
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1123.6 1147 53.9
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1121.3 1128 53.8
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1115.1 1136 53.0
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1112.8 1146 53.7
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1110.5 1135 53.0
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1104.7 1142 51.7
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1102.4 1133 52.4
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1101.7 1151 52.1
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1101.7 1141 52.8
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1095.5 1135 52.1
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1092.4 1142 51.1
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1085.9 1149 52.4
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1076.6 1130 51.7
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 1.5e-310 1069.7 1167 50.9
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 2.8e-309 1065.4 1146 51.8
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 1.7e-306 1056.2 1026 53.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 3.6e-304 1048.5 1131 51.5
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 7.4e-302 1040.8 1150 49.2
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 9.7e-302 1040.4 1147 49.3
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 6.3e-301 1037.7 1147 48.7
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 1.4e-300 1036.6 1147 48.6
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 2.4e-300 1035.8 1131 49.9
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 2.0e-299 1032.7 1147 49.1
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 2.6e-299 1032.3 1134 50.1
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 3.5e-299 1031.9 1169 50.7
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 1.7e-298 1029.6 1142 48.5
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 5.0e-298 1028.1 1036 53.2
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 1.7e-290 1003.0 1133 48.3
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 5.0e-290 1001.5 1130 49.2
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 3.0e-287 992.3 1136 48.2
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 4.0e-287 991.9 1136 48.2
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 8.8e-287 990.7 1144 48.1
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 5.7e-286 988.0 1133 47.7
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 7.5e-286 987.6 1133 47.7
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 3.8e-282 975.3 1198 46.6
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 2.8e-280 969.1 1129 48.7
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 1.2e-272 943.7 1109 47.8
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.2e-267 927.2 643 73.6
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-252 877.5 1157 44.6
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 5.4e-236 822.0 1130 43.6
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 7.3e-233 811.6 914 49.9
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 5.6e-225 785.4 1151 42.1
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 2.6e-222 776.5 764 52.1
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 1.4e-220 770.8 640 60.9
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 7.9e-219 765.0 1151 40.3
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 8.7e-210 734.9 644 58.5
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 9.7e-201 704.9 646 57.7
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 6.1e-187 659.1 1217 35.7
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.8e-186 657.5 1143 37.4
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 4.4e-185 652.9 1232 36.0
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.7e-181 641.0 610 57.2
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.9e-180 637.5 557 60.1
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 3.2e-180 636.7 641 53.0
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 3.3e-164 583.6 557 55.1
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.2e-152 544.3 683 46.4
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 3.4e-145 520.4 647 46.1
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 3.7e-144 516.9 516 53.5
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.7e-134 484.2 485 55.5
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 4.6e-134 483.4 485 56.1
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 3.1e-130 470.7 465 55.9
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 5.0e-72 277.3 1584 22.8
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.5e-72 276.9 518 35.3
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.1e-70 271.9 402 41.3
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.2e-62 246.1 518 33.6
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.7e-62 244.2 236 51.7
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-58 232.3 560 31.8
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 4.9e-51 207.6 496 31.0
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 7.7e-49 200.3 341 39.9
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-46 192.6 525 29.9
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 8.6e-40 170.2 636 27.4
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 8.6e-40 170.2 636 27.4
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-39 169.9 518 28.6
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 4.7e-38 164.5 238 41.2
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-35 156.0 269 37.5
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 4.6e-33 147.9 164 47.0
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-32 144.1 244 36.9
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 3.6e-30 138.3 351 33.0
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-25 123.2 96 59.4
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-25 121.7 162 44.4
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-24 119.8 218 38.1
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-21 109.4 198 36.4
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 5.8e-20 104.4 78 66.7
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-19 102.1 120 47.5
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.2e-17 96.7 58 75.9
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 5.6e-15 87.8 53 73.6
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.6e-14 86.3 135 37.8
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-13 83.2 57 63.2
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-11 75.5 139 30.9
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 6.4e-11 74.3 122 36.1
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-10 72.8 227 26.4
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-10 72.8 227 26.4


User provided reference genes

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