Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.3e-104 381.7 194 100.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 8.2e-95 350.5 194 91.2
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 4.1e-94 348.2 194 90.2
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.7e-92 342.8 194 89.7
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.0e-92 341.3 195 89.2
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.1e-91 340.1 194 88.1
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.2e-91 338.6 194 86.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.5e-91 337.8 194 86.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.6e-90 336.3 194 86.1
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.6e-90 335.1 194 86.1
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 6.1e-90 334.3 194 84.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 6.1e-90 334.3 194 87.1
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-89 332.8 194 86.1
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.9e-89 331.6 196 85.7
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 84.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.1e-89 331.3 194 84.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 8.8e-89 330.5 194 85.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 85.1
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-88 330.1 195 86.2
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 85.6
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.1e-88 330.1 197 85.8
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 85.6
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.1e-88 330.1 198 83.8
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 85.6
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.3e-88 328.6 194 85.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.3e-88 328.2 194 86.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 5.7e-88 327.8 195 85.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.7e-88 327.8 194 86.1
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 5.7e-88 327.8 192 84.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.7e-88 327.8 194 84.5
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.7e-88 327.8 194 84.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 5.7e-88 327.8 194 85.1
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 84.5
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 85.1
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 85.1
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 9.7e-88 327.0 194 83.5
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.7e-87 326.2 198 83.3
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 84.5
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.7e-87 325.1 194 83.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.8e-87 324.7 198 82.8
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 84.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 83.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 83.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 84.0
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 8.2e-87 323.9 195 83.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 82.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.1e-86 322.0 197 82.2
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 210 79.0
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.2e-85 320.1 217 76.5
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.5e-85 319.7 199 80.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-85 319.3 195 82.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 83.0
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 80.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.4e-85 318.5 193 82.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.4e-85 318.5 194 83.5
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 80.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 80.9
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 83.0
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.9e-85 317.8 201 81.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 199 80.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 80.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.2e-84 315.8 194 78.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.9e-84 315.5 201 77.1
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.8e-84 315.1 199 79.4
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 5.0e-84 314.7 203 77.8
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 5.0e-84 314.7 199 80.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 78.9
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.0e-84 314.7 196 80.6
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 83.5
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 8.5e-84 313.9 197 79.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.5e-84 313.9 200 80.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.5e-84 313.9 200 80.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.5e-84 313.9 196 81.1
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 80.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.1e-83 313.5 196 81.6
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.1e-83 313.5 198 81.3
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 79.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-83 312.8 203 75.9
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.5e-83 312.4 199 80.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.5e-83 312.4 199 80.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.2e-83 312.0 200 78.5
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 4.2e-83 311.6 199 79.9
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.5e-83 311.2 201 79.6
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.2e-83 310.8 202 77.7
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 9.4e-83 310.5 199 79.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 9.4e-83 310.5 199 79.9
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.2e-82 310.1 199 79.4
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.2e-82 310.1 199 79.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-82 309.3 206 76.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 79.4
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.7e-82 308.9 204 77.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.4e-81 306.6 201 75.1
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.4e-81 306.6 204 75.5
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.8e-81 306.2 197 79.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-81 306.2 197 79.2
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.8e-81 306.2 194 78.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 3.9e-81 305.1 196 79.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.9e-81 305.1 198 76.3
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 8.8e-81 303.9 201 78.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.1e-80 303.5 198 77.8
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.5e-80 303.1 205 75.1
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-80 302.8 198 78.8
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.6e-80 302.4 194 79.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 9.7e-80 300.4 243 67.9
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.3e-79 300.1 202 75.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.2e-79 299.3 194 78.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.4e-78 296.6 194 78.4
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.1e-78 295.4 198 77.8
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.1e-78 295.0 186 80.6
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.1e-78 295.0 176 85.2
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.1e-78 295.0 194 78.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 4.1e-78 295.0 211 72.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-77 293.5 175 82.3
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-77 291.2 196 73.5
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 200 73.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 200 73.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.7e-76 289.7 198 76.3
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.9e-76 288.9 198 75.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.9e-76 288.9 223 68.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 6.5e-76 287.7 180 80.6
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 8.5e-76 287.3 203 73.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.1e-75 287.0 192 71.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-74 283.5 175 80.0
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.1e-74 281.2 194 75.3
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 6.1e-74 281.2 182 78.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.0e-73 280.4 215 70.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 4.0e-73 278.5 180 80.0
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 3.3e-72 275.4 205 72.2
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.2e-71 272.7 201 71.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 4.8e-71 271.6 189 72.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.4e-70 270.0 197 67.0
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.8e-70 269.6 233 64.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.6e-69 266.5 213 66.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.5e-68 261.2 196 66.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 8.5e-68 260.8 187 72.2
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.2e-67 258.5 185 69.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 6.8e-65 251.1 187 66.3
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 8.8e-65 250.8 182 72.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 5.7e-64 248.1 198 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 7.5e-64 247.7 181 69.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.4e-62 243.4 177 72.3
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 2.7e-61 239.2 201 65.2
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.5e-61 238.8 194 64.9
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 2.7e-53 212.6 155 69.7
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.6e-50 203.4 130 81.5
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.2e-49 198.4 97 99.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.4e-46 188.3 116 81.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 9.2e-46 187.6 177 58.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 2.1e-42 176.4 100 91.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.8e-41 173.3 112 81.2
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.3e-39 167.2 94 90.4
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 4.9e-39 165.2 188 56.4
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.4e-31 138.3 75 80.0
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.2e-30 136.0 80 81.2
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 7.1e-30 134.8 102 70.6
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 3.5e-29 132.5 200 49.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 4.6e-29 132.1 97 74.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.6e-29 132.1 70 94.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 6.8e-25 118.2 190 40.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-24 117.5 71 83.1
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 5.8e-24 115.2 194 40.2
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 5.4e-22 108.6 194 42.3
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.7e-21 106.3 100 64.0
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.3e-20 103.2 194 41.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 5.6e-19 98.6 73 65.8
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.4e-16 89.4 72 58.3
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.3e-15 87.4 61 63.9
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 3.2e-14 82.8 167 35.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-13 80.1 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-13 79.7 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-11 73.2 61 60.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.4e-09 66.6 72 54.2


User provided reference genes

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