Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 7.2e-178 627.1 307 100.0
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 8.3e-33 145.2 337 36.5
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 8.3e-33 145.2 236 40.7
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 4.5e-31 139.4 317 39.4
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 9.2e-24 115.2 275 37.8
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.2e-23 114.8 293 34.8
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 3.8e-22 109.8 275 31.3
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 1.5e-21 107.8 263 30.8
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 5.6e-21 105.9 277 30.7
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 3.0e-19 100.1 189 38.1
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 5.7e-18 95.9 271 31.0
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.2e-17 94.0 292 31.8
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 6.4e-17 92.4 308 29.9
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 8.3e-17 92.0 288 29.9
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 2.4e-16 90.5 107 49.5
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 9.2e-16 88.6 273 30.0
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 2.0e-15 87.4 308 31.5
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 2.7e-15 87.0 294 29.3
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.7e-15 87.0 116 44.8
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 3.5e-15 86.7 281 26.7
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.0e-14 85.1 267 31.5
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 1.0e-14 85.1 290 29.0
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.3e-14 84.7 311 30.2
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 1.7e-14 84.3 268 29.9
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 3.0e-14 83.6 216 33.8
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 1.1e-13 81.6 112 42.0
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 1.1e-13 81.6 341 25.8
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.5e-13 81.3 303 27.4
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.5e-13 81.3 107 44.9
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.9e-13 80.9 111 42.3
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 2.5e-13 80.5 324 25.0
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.3e-13 80.1 282 29.1
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.1e-12 77.4 206 32.5
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.1e-12 77.4 206 32.5
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 2.1e-12 77.4 109 44.0
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 2.8e-12 77.0 305 27.2
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 2.8e-12 77.0 330 27.6
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.6e-12 76.6 285 27.4
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 6.2e-12 75.9 87 46.0
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 6.2e-12 75.9 413 25.7
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 6.2e-12 75.9 84 53.6
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 8.0e-12 75.5 379 23.7
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 8.0e-12 75.5 89 47.2
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 1.4e-11 74.7 77 48.1
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 1.8e-11 74.3 189 34.4
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 1.8e-11 74.3 282 27.0
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 2.3e-11 73.9 109 38.5
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 4.0e-11 73.2 294 24.5
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 8.9e-11 72.0 141 37.6
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 1.5e-10 71.2 260 27.7
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 2.0e-10 70.9 95 40.0
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 3.4e-10 70.1 298 27.5
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 3.4e-10 70.1 298 27.5
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 4.4e-10 69.7 308 26.0
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 5.8e-10 69.3 84 45.2
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 7.5e-10 68.9 380 23.7
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 9.8e-10 68.6 274 28.1
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.7e-09 67.8 189 30.7
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 2.2e-09 67.4 308 24.0
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 2.2e-09 67.4 286 25.9
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 2.9e-09 67.0 97 42.3
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 3.7e-09 66.6 291 27.8
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 3.7e-09 66.6 302 25.5
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 6.4e-09 65.9 110 39.1
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 6.4e-09 65.9 247 25.9
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 6.4e-09 65.9 114 39.5
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 8.3e-09 65.5 288 27.4
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 1.1e-08 65.1 259 29.7
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 4.1e-08 63.2 291 26.5
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 4.1e-08 63.2 291 28.2
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 4.1e-08 63.2 242 26.0
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 5.4e-08 62.8 103 40.8
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 5.4e-08 62.8 118 34.7
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 1.2e-07 61.6 281 26.0
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.2e-07 61.6 281 26.0
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 1.6e-07 61.2 150 32.0
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 2.0e-07 60.8 254 26.4
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 2.7e-07 60.5 244 26.2
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 6.0e-07 59.3 101 33.7
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 7.8e-07 58.9 84 42.9
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.0e-06 58.5 262 25.6
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 1.7e-06 57.8 108 38.9
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.3e-06 57.4 274 26.6
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 3.0e-06 57.0 64 48.4
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 6.6e-06 55.8 68 45.6
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 8.6e-06 55.5 328 26.2


User provided reference genes

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