Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 1.4e-69 266.2 131 100.0
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 1.9e-63 245.7 131 91.6
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 6.4e-35 151.0 140 57.1
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 9.3e-26 120.6 126 53.2
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 2.7e-25 119.0 145 49.7
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 8.1e-22 107.5 135 51.1
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 5.3e-21 104.8 125 47.2
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 1.2e-20 103.6 123 46.3
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 2.0e-20 102.8 141 43.3
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 5.8e-20 101.3 127 46.5
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.7e-19 99.8 134 47.0
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 2.2e-19 99.4 126 47.6
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 6.5e-19 97.8 132 43.9
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.9e-18 96.3 98 54.1
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 1.8e-16 89.7 113 46.9
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 3.9e-16 88.6 133 45.1
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 3.9e-16 88.6 149 42.3
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 8.7e-16 87.4 125 43.2
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 1.9e-15 86.3 120 41.7
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.9e-15 86.3 116 44.8
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 2.5e-15 85.9 107 46.7
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 4.3e-15 85.1 129 41.1
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 1.6e-14 83.2 138 40.6
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 3.7e-14 82.0 114 43.9
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 6.3e-14 81.3 118 44.1
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 1.4e-13 80.1 125 40.0
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 4.1e-13 78.6 136 39.7
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 9.0e-13 77.4 137 37.2
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 9.0e-13 77.4 129 40.3
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 9.0e-13 77.4 124 38.7
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 1.5e-12 76.6 119 39.5
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 1.5e-12 76.6 145 36.6
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 1.5e-12 76.6 131 38.2
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 2.6e-12 75.9 134 40.3
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 3.4e-12 75.5 125 39.2
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 3.4e-12 75.5 134 41.8
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 3.4e-12 75.5 121 38.8
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 5.9e-12 74.7 98 41.8
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 7.6e-12 74.3 76 44.7
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 1.3e-11 73.6 139 38.8
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 1.7e-11 73.2 137 38.7
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 2.9e-11 72.4 146 38.4
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 5.0e-11 71.6 123 36.6
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 5.0e-11 71.6 123 36.6
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 5.0e-11 71.6 123 36.6
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 5.0e-11 71.6 130 37.7
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 6.5e-11 71.2 123 36.6
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 6.5e-11 71.2 150 34.7
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 1.1e-10 70.5 121 38.0
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 1.4e-10 70.1 122 39.3
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 1.4e-10 70.1 79 43.0
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 1.4e-10 70.1 97 40.2
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.9e-10 69.7 67 50.7
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.9e-10 69.7 124 38.7
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 3.2e-10 68.9 137 35.8
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 3.2e-10 68.9 96 40.6
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 3.2e-10 68.9 152 36.2
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 5.5e-10 68.2 133 35.3
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 9.3e-10 67.4 120 38.3
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 1.2e-09 67.0 144 38.9
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 1.6e-09 66.6 127 35.4
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 2.1e-09 66.2 74 45.9
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 7.9e-09 64.3 126 36.5
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.0e-08 63.9 96 39.6
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.3e-08 63.5 126 36.5
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 1.8e-08 63.2 73 42.5
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 5.1e-08 61.6 135 37.0
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 6.7e-08 61.2 128 36.7
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.1e-07 60.5 112 38.4
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 1.9e-07 59.7 117 39.3
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 4.3e-07 58.5 131 33.6
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 5.7e-07 58.2 104 38.5
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 5.7e-07 58.2 128 32.0
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 7.4e-07 57.8 50 54.0
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 7.4e-07 57.8 114 37.7
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 7.4e-07 57.8 84 44.0
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 2.2e-06 56.2 130 36.2
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 2.2e-06 56.2 130 36.2
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 2.8e-06 55.8 130 36.2
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 3.7e-06 55.5 113 38.9
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 4.8e-06 55.1 125 33.6


User provided reference genes

Program Settings