Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia36963 Actinidia chinensis HOM05D003961 ORTHO05D055364 4.5e-49 197.6 98 100.0
DCAR_002388 Daucus carota HOM05D003961 ORTHO05D004528 1.3e-11 73.2 39 89.7
Dinv13990 Davidia involucrata HOM05D003961 ORTHO05D004528 1.3e-11 73.2 39 89.7
CSS0001637 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 1.7e-11 72.8 39 87.2
Dinv44530 Davidia involucrata HOM05D003961 ORTHO05D004528 1.7e-11 72.8 39 87.2
Lj6A609T80 Lonicera japonica HOM05D003961 ORTHO05D004528 1.7e-11 72.8 39 87.2
Actinidia40151 Actinidia chinensis HOM05D003961 ORTHO05D004528 2.8e-11 72.0 39 87.2
DCAR_030632 Daucus carota HOM05D003961 ORTHO05D004528 2.8e-11 72.0 39 82.1
GSVIVG01017963001 Vitis vinifera HOM05D003961 ORTHO05D004528 2.8e-11 72.0 39 89.7
Oeu023394.1 Olea europaea HOM05D003961 ORTHO05D004528 3.7e-11 71.6 39 87.2
BcaC07g42133 Brassica carinata HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 82.1
A09p67460 Brassica napus HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 82.1
C08p51740 Brassica napus HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 82.1
BolC8t52703H Brassica oleracea HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 82.1
BraA09t42074Z Brassica rapa HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 82.1
CAN.G907.4 Capsicum annuum HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 87.2
Cc03_g03700 Coffea canephora HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 87.2
Thhalv10007749m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 4.8e-11 71.2 39 82.1
Actinidia23507 Actinidia chinensis HOM05D003961 ORTHO05D004528 6.3e-11 70.9 39 87.2
Cpa.g.sc58.116 Carica papaya HOM05D003961 ORTHO05D004528 6.3e-11 70.9 39 87.2
THA.LOC104801547 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 6.3e-11 70.9 39 82.1
AL1G15190 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
AT1G05370 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
MSTRG.9986 Avicennia marina HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 84.6
A10p04070 Brassica napus HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
C05p03710 Brassica napus HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
BolC5t29146H Brassica oleracea HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
BraA10t42678Z Brassica rapa HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
Carub.0001s0471 Capsella rubella HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
Manes.15G028400 Manihot esculenta HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 87.2
Sp1g04240 Schrenkiella parvula HOM05D003961 ORTHO05D004528 1.1e-10 70.1 39 79.5
Oeu050277.1 Olea europaea HOM05D003961 ORTHO05D004528 1.4e-10 69.7 39 87.2
Aa31LG1G19250 Aethionema arabicum HOM05D003961 ORTHO05D004528 1.8e-10 69.3 39 79.5
CARHR004880 Cardamine hirsuta HOM05D003961 ORTHO05D004528 1.8e-10 69.3 39 79.5
Peaxi162Scf00092g01211 Petunia axillaris HOM05D003961 ORTHO05D004528 1.8e-10 69.3 39 84.6
Potri.010G088300 Populus trichocarpa HOM05D003961 ORTHO05D004528 1.8e-10 69.3 39 84.6
Rhsim02G0023600 Rhododendron simsii HOM05D003961 ORTHO05D004528 1.8e-10 69.3 39 84.6
Sabra10G0054500 Salix brachista HOM05D003961 ORTHO05D004528 1.8e-10 69.3 39 84.6
TWI73G0616 Tripterygium wilfordii HOM05D003961 ORTHO05D004528 1.8e-10 69.3 90 50.0
Atru.chr4.2476 Acer truncatum HOM05D003961 ORTHO05D004528 2.4e-10 68.9 39 84.6
Atru.ctg752_3.90 Acer truncatum HOM05D003961 ORTHO05D004528 2.4e-10 68.9 39 84.6
Eucgr.H03517 Eucalyptus grandis HOM05D003961 ORTHO05D004528 2.4e-10 68.9 39 84.6
Nitab4.5_0004283g0010 Nicotiana tabacum HOM05D003961 ORTHO05D004528 4.1e-10 68.2 39 82.1
MSTRG.4028 Avicennia marina HOM05D003961 ORTHO05D004528 5.4e-10 67.8 39 79.5
CSS0032523 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 5.4e-10 67.8 39 79.5
CANSAT78G1057 Cannabis sativa HOM05D003961 ORTHO05D004528 5.4e-10 67.8 39 82.1
Ciclev10005024m.g Citrus clementina HOM05D003961 ORTHO05D004528 5.4e-10 67.8 39 82.1
Migut.G00334 Erythranthe guttata HOM05D003961 ORTHO05D004528 5.4e-10 67.8 39 82.1
HanXRQChr10g0296391 Helianthus annuus HOM05D003961 ORTHO05D004528 5.4e-10 67.8 39 79.5
Cfa015636 Carpinus fangiana HOM05D003961 ORTHO05D004528 7.0e-10 67.4 39 82.1
CiPaw.01G165200 Carya illinoinensis HOM05D003961 ORTHO05D004528 7.0e-10 67.4 39 82.1
Nn1g02291 Nelumbo nucifera HOM05D003961 ORTHO05D004528 7.0e-10 67.4 39 82.1
Prupe.1G012800 Prunus persica HOM05D003961 ORTHO05D004528 7.0e-10 67.4 39 82.1
THA.LOC104826163 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 7.0e-10 67.4 39 76.9
Manes.03G179600 Manihot esculenta HOM05D003961 ORTHO05D004528 9.1e-10 67.0 39 82.1
Nitab4.5_0000043g0220 Nicotiana tabacum HOM05D003961 ORTHO05D004528 9.1e-10 67.0 39 79.5
Phvul.007G056700 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 9.1e-10 67.0 39 79.5
PGR004G2370 Punica granatum HOM05D003961 ORTHO05D004528 9.1e-10 67.0 65 60.0
QL06p002667 Quercus lobata HOM05D003961 ORTHO05D004528 9.1e-10 67.0 38 81.6
VMungo0720G2903 Vigna mungo HOM05D003961 ORTHO05D004528 9.1e-10 67.0 39 79.5
arahy.Tifrunner.gnm1.ann1.K10YKQ Arachis hypogaea HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
arahy.Tifrunner.gnm1.ann1.X5EF0Z Arachis hypogaea HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
Nitab4.5_0000321g0090 Nicotiana tabacum HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
Potri.008G152100 Populus trichocarpa HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
Solyc09g075970.3 Solanum lycopersicum HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
Sopen09g030800 Solanum pennellii HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
PGSC0003DMG400030080 Solanum tuberosum HOM05D003961 ORTHO05D004528 1.2e-09 66.6 39 79.5
Aqoxy5G00479 Aquilegia oxysepala HOM05D003961 ORTHO05D004528 1.6e-09 66.2 38 86.8
AUR62033612 Chenopodium quinoa HOM05D003961 ORTHO05D004528 1.6e-09 66.2 86 50.0
Sabra08G0115900 Salix brachista HOM05D003961 ORTHO05D004528 1.6e-09 66.2 38 81.6
TAR362G0627 Trochodendron aralioides HOM05D003961 ORTHO05D004528 2.0e-09 65.9 39 82.1
unitig_748.g8543 Utricularia gibba HOM05D003961 ORTHO05D004528 2.0e-09 65.9 39 74.4
CiPaw.02G096900 Carya illinoinensis HOM05D003961 ORTHO05D004528 2.7e-09 65.5 39 79.5
ClCG05G005190 Citrullus lanatus HOM05D003961 ORTHO05D004528 2.7e-09 65.5 39 76.9
MELO3C006535.2 Cucumis melo HOM05D003961 ORTHO05D004528 2.7e-09 65.5 39 76.9
CsaV3_3G013370 Cucumis sativus L. HOM05D003961 ORTHO05D004528 2.7e-09 65.5 39 76.9
Lsat_1_v5_gn_5_148741 Lactuca sativa HOM05D003961 ORTHO05D004528 2.7e-09 65.5 40 82.5
MD13G1192100 Malus domestica HOM05D003961 ORTHO05D004528 2.7e-09 65.5 64 57.8
FvH4_4g15420 Fragaria vesca HOM05D003961 ORTHO05D004528 3.5e-09 65.1 39 76.9
FAN07G0246 Fragaria x ananassa HOM05D003961 ORTHO05D004528 3.5e-09 65.1 39 76.9
FAN12G2300 Fragaria x ananassa HOM05D003961 ORTHO05D004528 3.5e-09 65.1 39 76.9
FAN17G1073 Fragaria x ananassa HOM05D003961 ORTHO05D004528 3.5e-09 65.1 39 76.9
Rhsim04G0203000 Rhododendron simsii HOM05D003961 ORTHO05D004528 3.5e-09 65.1 40 82.5
TAR365G0124 Trochodendron aralioides HOM05D003961 ORTHO05D004528 3.5e-09 65.1 37 81.1
arahy.Tifrunner.gnm1.ann1.6SSG9H Arachis hypogaea HOM05D003961 ORTHO05D004528 4.5e-09 64.7 39 74.4
arahy.Tifrunner.gnm1.ann1.KTSS0P Arachis hypogaea HOM05D003961 ORTHO05D004528 4.5e-09 64.7 39 74.4
Glyma.10G248600 Glycine max HOM05D003961 ORTHO05D004528 4.5e-09 64.7 39 76.9
HanXRQChr04g0109101 Helianthus annuus HOM05D003961 ORTHO05D004528 4.5e-09 64.7 39 76.9
RcHm_v2.0_Chr4g0416361 Rosa chinensis HOM05D003961 ORTHO05D004528 4.5e-09 64.7 39 74.4
Glyma.20G145500 Glycine max HOM05D003961 ORTHO05D004528 5.9e-09 64.3 64 56.2
Sed0004334 Sechium edule HOM05D003961 ORTHO05D004528 5.9e-09 64.3 39 74.4
EL10Ac3g06424 Beta vulgaris HOM05D003961 ORTHO05D004528 7.7e-09 63.9 40 80.0
FAN22G1591 Fragaria x ananassa HOM05D003961 ORTHO05D004528 7.7e-09 63.9 39 74.4
Lalb_Chr05g0210961 Lupinus albus HOM05D003961 ORTHO05D004528 7.7e-09 63.9 39 74.4
SalBow2G1240 Salvia bowleyana HOM05D003961 ORTHO05D004528 7.7e-09 63.9 99 44.4
Hund12136 Selenicereus undatus HOM05D003961 ORTHO05D004528 7.7e-09 63.9 40 80.0
SGA_v2.0_scaffold39G15244 Striga asiatica HOM05D003961 ORTHO05D004528 7.7e-09 63.9 37 78.4
unitig_748.g8337 Utricularia gibba HOM05D003961 ORTHO05D004528 7.7e-09 63.9 39 71.8
Lj5g0020823 Lotus japonicus HOM05D003961 ORTHO05D004528 1.0e-08 63.5 39 74.4
PSO210G4025 Papaver somniferum HOM05D003961 ORTHO05D004528 1.3e-08 63.2 39 69.2
PSO832G1325 Papaver somniferum HOM05D003961 ORTHO05D004528 1.3e-08 63.2 39 69.2
Ca_10910_v3 Cicer arietinum L. HOM05D003961 ORTHO05D004528 1.7e-08 62.8 41 75.6
Peaxi162Scf00642g00006 Petunia axillaris HOM05D003961 ORTHO05D004528 1.7e-08 62.8 39 74.4
MBI04_g20819_MAGBIO Magnolia biondii HOM05D003961 ORTHO05D004528 2.2e-08 62.4 38 84.2
Oeu031235.1 Olea europaea HOM05D003961 ORTHO05D004528 3.8e-08 61.6 37 81.1
Psat6g208040 Pisum sativum HOM05D003961 ORTHO05D004528 3.8e-08 61.6 41 73.2
Nn4g26303 Nelumbo nucifera HOM05D003961 ORTHO05D004528 5.0e-08 61.2 40 70.0
Sc13g0004340 Simmondsia chinensis HOM05D003961 ORTHO05D004528 5.0e-08 61.2 40 72.5
Actinidia08494 Actinidia chinensis HOM05D003961 ORTHO05D004528 6.5e-08 60.8 39 82.1
Ah.13g073820 Amaranthus hybridus HOM05D003961 ORTHO05D004528 8.5e-08 60.5 40 75.0
Ah.04g154530 Amaranthus hybridus HOM05D003961 ORTHO05D004528 1.1e-07 60.1 40 72.5
COL.COLO4_05309 Corchorus olitorius HOM05D003961 ORTHO05D004528 1.5e-07 59.7 64 56.2
Medtr1g104540 Medicago truncatula HOM05D003961 ORTHO05D004528 1.5e-07 59.7 41 73.2
Duzib052G0053 Durio zibethinus HOM05D003961 ORTHO05D004528 1.9e-07 59.3 39 79.5
Duzib212G0915 Durio zibethinus HOM05D003961 ORTHO05D004528 1.9e-07 59.3 39 79.5
TAR633G2096 Trochodendron aralioides HOM05D003961 ORTHO05D004528 2.5e-07 58.9 37 73.0
Gohir.A02G031600 Gossypium hirsutum HOM05D003961 ORTHO05D004528 5.5e-07 57.8 64 54.7
Gorai.005G042200 Gossypium raimondii HOM05D003961 ORTHO05D004528 5.5e-07 57.8 64 54.7
Thecc.04G230700 Theobroma cacao HOM05D003961 ORTHO05D004528 1.6e-06 56.2 64 53.1
Sed0007259 Sechium edule HOM05D003961 ORTHO05D004528 2.7e-06 55.5 39 66.7
Gohir.D02G038300 Gossypium hirsutum HOM05D003961 ORTHO05D004528 3.6e-06 55.1 64 53.1
Duzib151G0309 Durio zibethinus HOM05D003961 ORTHO05D004528 4.7e-06 54.7 39 74.4
Sc19g0004200 Simmondsia chinensis HOM05D003961 ORTHO05D004528 6.1e-06 54.3 40 72.5


User provided reference genes

Program Settings