Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 7.8e-100 367.1 180 100.0
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 7.9e-60 234.2 132 86.4
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 7.9e-60 234.2 132 86.4
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 1.4e-59 233.4 130 86.9
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 6.7e-59 231.1 132 83.3
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 3.3e-58 228.8 132 84.8
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 3.3e-58 228.8 132 83.3
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 3.3e-58 228.8 132 84.1
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 4.4e-58 228.4 119 96.6
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 5.7e-58 228.0 132 83.3
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 7.4e-58 227.6 132 84.1
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 2.8e-57 225.7 132 81.8
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 3.7e-57 225.3 132 81.1
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 3.7e-57 225.3 132 81.1
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 4.8e-57 224.9 132 81.1
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 8.2e-57 224.2 132 83.3
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 1.1e-56 223.8 132 82.6
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 1.4e-56 223.4 132 79.5
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 1.4e-56 223.4 132 81.8
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 1.4e-56 223.4 132 81.8
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 1.8e-56 223.0 132 81.8
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 1.8e-56 223.0 132 80.3
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 2.4e-56 222.6 132 80.3
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 3.1e-56 222.2 132 81.8
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 3.1e-56 222.2 132 78.8
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 3.1e-56 222.2 132 80.3
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 4.1e-56 221.9 132 81.1
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 4.1e-56 221.9 133 78.9
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 4.1e-56 221.9 130 82.3
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 9.1e-56 220.7 132 81.1
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.2e-55 220.3 132 79.5
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 1.5e-55 219.9 132 80.3
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 2.0e-55 219.5 132 80.3
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 2.0e-55 219.5 132 80.3
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 2.6e-55 219.2 132 79.5
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.4e-55 218.8 138 77.5
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 80.3
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 78.8
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 78.8
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 78.8
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 79.5
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 80.3
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 4.5e-55 218.4 132 78.8
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 5.9e-55 218.0 133 81.2
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 5.9e-55 218.0 132 79.5
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 7.7e-55 217.6 132 78.0
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.0e-54 217.2 137 73.7
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 1.0e-54 217.2 132 78.8
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.0e-54 217.2 132 77.3
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 1.3e-54 216.9 132 80.3
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 1.3e-54 216.9 132 78.8
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 1.3e-54 216.9 132 79.5
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 1.3e-54 216.9 132 79.5
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 1.3e-54 216.9 132 78.8
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 1.7e-54 216.5 132 77.3
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 1.7e-54 216.5 132 77.3
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 2.2e-54 216.1 132 78.0
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 2.2e-54 216.1 132 79.5
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 2.9e-54 215.7 132 78.8
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 5.0e-54 214.9 132 77.3
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 5.0e-54 214.9 132 78.0
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 5.0e-54 214.9 134 74.6
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 6.5e-54 214.5 132 78.0
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 6.5e-54 214.5 132 77.3
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 8.5e-54 214.2 132 77.3
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 1.1e-53 213.8 132 75.8
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 1.4e-53 213.4 132 78.8
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 1.9e-53 213.0 132 78.0
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 1.9e-53 213.0 130 79.2
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 1.9e-53 213.0 132 77.3
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 3.2e-53 212.2 124 81.5
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 3.2e-53 212.2 132 77.3
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 4.2e-53 211.8 132 77.3
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 4.2e-53 211.8 134 78.4
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 5.5e-53 211.5 133 78.2
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 9.4e-53 210.7 132 78.0
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 9.4e-53 210.7 132 75.8
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 1.2e-52 210.3 132 75.0
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 1.6e-52 209.9 133 77.4
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 1.6e-52 209.9 133 77.4
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 1.6e-52 209.9 133 77.4
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 1.6e-52 209.9 133 77.4
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.7e-52 209.1 132 76.5
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 3.6e-52 208.8 132 78.0
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 7.9e-52 207.6 127 75.6
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 3.0e-51 205.7 132 75.8
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 3.0e-51 205.7 132 75.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 5.2e-51 204.9 132 74.2
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 2.0e-50 203.0 134 73.9
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 2.0e-50 203.0 133 75.2
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 2.0e-50 203.0 133 75.2
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 5.7e-50 201.4 134 73.1
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 4.8e-49 198.4 115 85.2
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 3.1e-48 195.7 132 72.0
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 7.7e-47 191.0 132 71.2
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 7.7e-47 191.0 131 71.0
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 3.8e-46 188.7 120 73.3
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 7.2e-45 184.5 130 66.9
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 7.2e-45 184.5 116 79.3
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 4.7e-44 181.8 132 66.7
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 6.1e-44 181.4 122 70.5
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 1.0e-43 180.6 132 68.2
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.2e-42 177.2 120 74.2
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.2e-42 177.2 130 63.8
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.2e-42 177.2 130 63.8
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 3.7e-41 172.2 108 75.0
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 1.1e-40 170.6 132 65.2
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 4.1e-40 168.7 132 62.9
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 3.8e-38 162.2 130 60.8
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 9.4e-37 157.5 98 80.6
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 6.1e-36 154.8 125 59.2
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 4.0e-35 152.1 90 84.4
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 1.9e-13 80.1 131 40.5
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.4e-11 73.9 131 32.1
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 1.9e-08 63.5 55 52.7
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 1.6e-07 60.5 117 36.8


User provided reference genes

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