Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 4.0e-218 761.1 382 100.0
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 8.4e-144 514.2 346 79.2
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 4.5e-129 465.3 311 78.5
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 3.2e-127 459.1 311 77.5
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 5.5e-127 458.4 317 77.3
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 1.0e-125 454.1 304 77.3
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 2.3e-125 453.0 303 78.2
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 3.0e-125 452.6 310 75.8
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 3.9e-125 452.2 330 71.8
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 8.8e-125 451.1 303 77.6
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 8.8e-125 451.1 321 74.1
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 1.1e-124 450.7 314 76.8
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.5e-124 450.3 315 74.3
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 1.5e-124 450.3 345 70.4
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 2.0e-124 449.9 304 77.6
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.0e-124 449.9 311 74.9
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 2.0e-124 449.9 317 73.8
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 2.5e-124 449.5 346 71.4
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 3.3e-124 449.1 318 75.8
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 3.3e-124 449.1 349 71.1
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 4.3e-124 448.7 303 77.9
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 5.7e-124 448.4 304 77.3
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 5.7e-124 448.4 327 72.8
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 7.4e-124 448.0 341 70.7
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 9.7e-124 447.6 318 74.2
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 9.7e-124 447.6 303 75.6
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 1.3e-123 447.2 341 70.7
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.2e-123 446.4 301 77.7
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 2.2e-123 446.4 303 76.9
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 2.2e-123 446.4 316 74.1
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 2.8e-123 446.0 306 75.5
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 2.8e-123 446.0 327 72.2
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 3.7e-123 445.7 303 76.9
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 3.7e-123 445.7 306 75.5
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.8e-123 445.3 295 78.0
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 6.3e-123 444.9 341 70.4
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 8.2e-123 444.5 303 77.2
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 8.2e-123 444.5 315 73.7
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 1.1e-122 444.1 324 72.8
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.1e-122 444.1 301 76.4
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 1.4e-122 443.7 303 76.6
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 1.4e-122 443.7 313 75.1
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 1.8e-122 443.4 306 76.5
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 2.4e-122 443.0 304 76.3
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 3.1e-122 442.6 311 74.3
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 4.1e-122 442.2 347 69.5
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 5.3e-122 441.8 330 71.5
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 5.3e-122 441.8 303 75.9
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 5.3e-122 441.8 345 69.6
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 9.1e-122 441.0 301 76.1
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 1.2e-121 440.7 303 76.2
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 1.2e-121 440.7 315 74.6
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 2.0e-121 439.9 307 75.6
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 2.0e-121 439.9 311 73.6
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 2.0e-121 439.9 311 73.6
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 3.4e-121 439.1 306 74.8
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 4.5e-121 438.7 301 75.4
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 4.5e-121 438.7 346 68.5
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 7.7e-121 438.0 328 72.9
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 1.7e-120 436.8 327 70.9
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 2.2e-120 436.4 303 74.9
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 5.0e-120 435.3 317 72.6
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 8.5e-120 434.5 303 74.6
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 1.1e-119 434.1 303 74.9
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 1.1e-119 434.1 304 75.7
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 1.4e-119 433.7 324 72.5
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 1.9e-119 433.3 322 72.0
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.5e-119 433.0 324 72.5
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 2.5e-119 433.0 327 70.9
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.5e-119 433.0 306 74.2
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 3.2e-119 432.6 315 72.4
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 3.2e-119 432.6 316 71.5
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 7.2e-119 431.4 316 73.4
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 9.4e-119 431.0 320 71.6
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 9.4e-119 431.0 327 70.6
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.2e-118 430.6 346 67.1
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 1.6e-118 430.3 303 74.6
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.6e-118 430.3 327 70.0
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.6e-118 430.3 310 73.5
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.6e-118 429.1 310 73.2
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 6.1e-118 428.3 327 70.0
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 7.9e-118 427.9 303 74.3
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.9e-118 427.9 316 71.2
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 7.9e-118 427.9 317 71.3
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 1.0e-117 427.6 355 67.0
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.0e-117 427.6 301 72.8
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.0e-117 427.6 301 75.1
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 1.4e-117 427.2 306 73.9
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.4e-117 427.2 316 70.9
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.4e-117 427.2 310 72.9
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 1.8e-117 426.8 306 73.9
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 1.8e-117 426.8 316 70.9
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 2.3e-117 426.4 306 73.5
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 3.0e-117 426.0 324 71.3
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 3.0e-117 426.0 306 73.9
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 3.0e-117 426.0 317 71.9
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 3.9e-117 425.6 306 73.9
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 5.1e-117 425.2 324 71.0
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 5.1e-117 425.2 316 70.6
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 6.7e-117 424.9 324 71.0
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 6.7e-117 424.9 324 71.0
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.5e-116 423.7 324 70.1
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 2.6e-116 422.9 305 72.8
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 4.4e-116 422.2 303 73.3
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.4e-116 422.2 316 69.9
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.4e-116 422.2 316 69.9
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 7.4e-116 421.4 306 72.5
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 9.7e-116 421.0 306 72.5
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 3.7e-115 419.1 306 72.2
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 3.7e-115 419.1 303 72.6
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 6.3e-115 418.3 327 68.8
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 8.2e-115 417.9 303 71.9
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.1e-114 417.5 320 70.0
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 2.4e-114 416.4 327 67.0
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 4.1e-114 415.6 313 69.3
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 5.3e-114 415.2 306 70.9
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 1.2e-113 414.1 303 71.3
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 1.2e-113 414.1 304 70.1
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 7.7e-113 411.4 312 68.6
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 3.8e-112 409.1 278 77.0
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 8.0e-110 401.4 348 63.5
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 8.0e-110 401.4 313 67.4
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 1.0e-109 401.0 316 69.3
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 9.7e-108 394.4 299 70.2
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 9.7e-108 394.4 313 68.4
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 8.5e-104 381.3 345 61.7
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.0e-101 374.4 252 76.2
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 5.2e-93 345.5 311 60.1
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 5.7e-92 342.0 318 60.4
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 1.9e-79 300.4 257 62.6
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 8.9e-77 291.6 181 82.9
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 8.4e-59 231.9 142 83.1
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 4.1e-58 229.6 144 81.9
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.1e-56 222.6 162 72.8
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.3e-55 219.5 162 71.6
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 7.1e-50 202.2 199 57.3
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.1e-41 174.1 138 68.1
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 8.7e-40 168.7 173 54.9
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.8e-37 161.0 125 68.8
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.2e-36 158.3 121 69.4
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 3.2e-26 123.6 71 84.5
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 5.5e-26 122.9 67 86.6
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 7.9e-25 119.0 139 50.4
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 7.9e-25 119.0 72 80.6
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 2.3e-24 117.5 112 56.2
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 6.7e-24 115.9 97 62.9
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 4.3e-23 113.2 72 79.2
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 7.4e-23 112.5 96 61.5
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.6e-23 112.1 95 62.1
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.1e-22 110.9 126 52.4
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.1e-22 110.9 126 52.4
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 1.4e-21 108.2 74 68.9
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 5.3e-21 106.3 74 67.6
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 1.9e-18 97.8 65 73.8
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 2.7e-17 94.0 110 47.3
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 1.3e-11 75.1 41 85.4
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.9e-11 73.9 53 66.0
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 3.2e-10 70.5 58 62.1
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 2.1e-09 67.8 74 52.7
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 6.1e-09 66.2 294 25.9
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 3.7e-06 57.0 40 80.0


User provided reference genes

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