Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia35648 Actinidia chinensis HOM05D002012 ORTHO05D001992 8.4e-140 500.4 256 100.0
Actinidia30209 Actinidia chinensis HOM05D002012 ORTHO05D001992 4.4e-64 248.8 241 63.9
Actinidia35644 Actinidia chinensis HOM05D002012 ORTHO05D001992 2.4e-57 226.5 176 75.0
Actinidia35647 Actinidia chinensis HOM05D002012 ORTHO05D001992 1.2e-56 224.2 144 84.7
CSS0019146 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 2.2e-55 219.9 254 55.9
Dinv25565 Davidia involucrata HOM05D002012 ORTHO05D001992 3.3e-51 206.1 241 53.5
Duzib168G1258 Durio zibethinus HOM05D002012 ORTHO05D001992 7.3e-51 204.9 248 52.4
Dinv42379 Davidia involucrata HOM05D002012 ORTHO05D001992 1.2e-50 204.1 241 54.4
Lj7C686G2 Lonicera japonica HOM05D002012 ORTHO05D001992 1.8e-49 200.3 226 56.2
TAR636G1422 Trochodendron aralioides HOM05D002012 ORTHO05D001992 4.0e-49 199.1 251 51.0
TAR624G1209 Trochodendron aralioides HOM05D002012 ORTHO05D001992 9.0e-49 198.0 251 51.4
GSVIVG01015094001 Vitis vinifera HOM05D002012 ORTHO05D001992 9.0e-49 198.0 250 50.8
Haze_25988 Corylus avellana HOM05D002012 ORTHO05D001992 2.0e-48 196.8 251 49.4
vmacro17189 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 2.0e-48 196.8 251 51.8
Cfa003016 Carpinus fangiana HOM05D002012 ORTHO05D001992 2.9e-47 193.0 251 49.0
Cc06_g12050 Coffea canephora HOM05D002012 ORTHO05D001992 2.9e-47 193.0 300 47.7
Solyc07g041660.4 Solanum lycopersicum HOM05D002012 ORTHO05D001992 6.4e-47 191.8 251 50.2
QL11p000520 Quercus lobata HOM05D002012 ORTHO05D001992 1.4e-46 190.7 251 49.0
Thecc.09G078800 Theobroma cacao HOM05D002012 ORTHO05D001992 1.9e-46 190.3 242 51.2
CiPaw.03G207500 Carya illinoinensis HOM05D002012 ORTHO05D001992 4.2e-46 189.1 251 48.2
EL10Ac8g19105 Beta vulgaris HOM05D002012 ORTHO05D001992 9.3e-46 188.0 242 50.0
Manes.16G096300 Manihot esculenta HOM05D002012 ORTHO05D001992 9.3e-46 188.0 249 50.6
Oeu063415.1 Olea europaea HOM05D002012 ORTHO05D001992 1.2e-45 187.6 266 47.0
Gohir.A05G033400 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.6e-45 187.2 242 50.4
Sopen07g021140 Solanum pennellii HOM05D002012 ORTHO05D001992 1.6e-45 187.2 251 49.8
CsaV3_2G001170 Cucumis sativus L. HOM05D002012 ORTHO05D001992 2.1e-45 186.8 244 50.4
MBI19_g11833_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 2.1e-45 186.8 248 50.8
Nitab4.5_0000343g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 2.1e-45 186.8 251 49.8
Gorai.009G035300 Gossypium raimondii HOM05D002012 ORTHO05D001992 2.7e-45 186.4 242 50.4
CAN.G258.8 Capsicum annuum HOM05D002012 ORTHO05D001992 4.6e-45 185.7 242 51.2
MELO3C004651.2 Cucumis melo HOM05D002012 ORTHO05D001992 6.0e-45 185.3 229 52.4
SalBow6G4123 Salvia bowleyana HOM05D002012 ORTHO05D001992 6.0e-45 185.3 242 50.4
Gohir.D05G034900 Gossypium hirsutum HOM05D002012 ORTHO05D001992 7.8e-45 184.9 242 50.0
ClCG11G001450 Citrullus lanatus HOM05D002012 ORTHO05D001992 1.0e-44 184.5 229 52.4
Nn8g38672 Nelumbo nucifera HOM05D002012 ORTHO05D001992 1.0e-44 184.5 301 47.2
Sc08g0009350 Simmondsia chinensis HOM05D002012 ORTHO05D001992 1.3e-44 184.1 240 50.0
Sc08g0008860 Simmondsia chinensis HOM05D002012 ORTHO05D001992 1.7e-44 183.7 240 50.0
SGA_v2.0_scaffold91G28092 Striga asiatica HOM05D002012 ORTHO05D001992 2.3e-44 183.3 241 49.8
TWI63G1275 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 2.3e-44 183.3 248 48.8
PSO135G0920 Papaver somniferum HOM05D002012 ORTHO05D001992 3.0e-44 183.0 243 50.6
Potri.006G143000 Populus trichocarpa HOM05D002012 ORTHO05D001992 5.1e-44 182.2 301 45.8
TWI34G1750 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 5.1e-44 182.2 248 48.0
Nitab4.5_0008382g0010 Nicotiana tabacum HOM05D002012 ORTHO05D001992 6.6e-44 181.8 251 49.0
ATR0598G305 Amborella trichopoda HOM05D002012 ORTHO05D001992 8.7e-44 181.4 238 51.3
Oeu020557.1 Olea europaea HOM05D002012 ORTHO05D001992 8.7e-44 181.4 241 49.4
COL.COLO4_18109 Corchorus olitorius HOM05D002012 ORTHO05D001992 1.1e-43 181.0 242 49.6
PGR142G4458 Punica granatum HOM05D002012 ORTHO05D001992 1.9e-43 180.3 240 49.6
Sabra06G0112000 Salix brachista HOM05D002012 ORTHO05D001992 1.9e-43 180.3 294 45.2
MSTRG.19467 Avicennia marina HOM05D002012 ORTHO05D001992 2.5e-43 179.9 238 50.0
PSO724G0857 Papaver somniferum HOM05D002012 ORTHO05D001992 4.3e-43 179.1 243 49.8
Duzib187G1411 Durio zibethinus HOM05D002012 ORTHO05D001992 7.3e-43 178.3 252 48.4
RhsimUnG0192400 Rhododendron simsii HOM05D002012 ORTHO05D001992 1.3e-42 177.6 274 46.7
CiPaw.04G144400 Carya illinoinensis HOM05D002012 ORTHO05D001992 2.1e-42 176.8 251 45.8
DCAR_011951 Daucus carota HOM05D002012 ORTHO05D001992 2.1e-42 176.8 261 48.3
Sed0011181 Sechium edule HOM05D002012 ORTHO05D001992 2.8e-42 176.4 248 48.0
Migut.J00935 Erythranthe guttata HOM05D002012 ORTHO05D001992 6.2e-42 175.3 251 46.6
THA.LOC104808888 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 6.2e-42 175.3 242 45.0
MD00G1142500 Malus domestica HOM05D002012 ORTHO05D001992 1.1e-41 174.5 258 45.3
MD02G1089000 Malus domestica HOM05D002012 ORTHO05D001992 1.1e-41 174.5 258 45.3
FAN23G2131 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.4e-41 174.1 252 46.0
RcHm_v2.0_Chr2g0094551 Rosa chinensis HOM05D002012 ORTHO05D001992 1.8e-41 173.7 252 45.6
Ciclev10007498m.g Citrus clementina HOM05D002012 ORTHO05D001992 3.1e-41 172.9 252 47.2
CANSAT56G2451 Cannabis sativa HOM05D002012 ORTHO05D001992 5.3e-41 172.2 241 46.5
FAN26G1695 Fragaria x ananassa HOM05D002012 ORTHO05D001992 2.0e-40 170.2 252 45.2
FAN19G0643 Fragaria x ananassa HOM05D002012 ORTHO05D001992 3.4e-40 169.5 252 45.2
Actinidia35645 Actinidia chinensis HOM05D002012 ORTHO05D001992 4.5e-40 169.1 191 59.2
FAN28G1411 Fragaria x ananassa HOM05D002012 ORTHO05D001992 4.5e-40 169.1 251 45.4
ECA234G2093 Erigeron canadensis HOM05D002012 ORTHO05D001992 5.8e-40 168.7 255 46.3
MSTRG.26464 Avicennia marina HOM05D002012 ORTHO05D001992 7.6e-40 168.3 251 45.4
Eucgr.C00822 Eucalyptus grandis HOM05D002012 ORTHO05D001992 7.6e-40 168.3 299 43.8
FvH4_1g08450 Fragaria vesca HOM05D002012 ORTHO05D001992 7.6e-40 168.3 252 44.8
Aa31LG9G5250 Aethionema arabicum HOM05D002012 ORTHO05D001992 1.3e-39 167.5 248 43.5
FAN26G0159 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.7e-39 167.2 252 44.8
Aqoxy7G04080 Aquilegia oxysepala HOM05D002012 ORTHO05D001992 8.4e-39 164.9 227 48.5
Phvul.009G227900 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 8.4e-39 164.9 250 44.8
HanXRQChr10g0319671 Helianthus annuus HOM05D002012 ORTHO05D001992 2.4e-38 163.3 239 47.3
Ah.09g231410 Amaranthus hybridus HOM05D002012 ORTHO05D001992 3.2e-38 162.9 242 47.5
MD15G1216100 Malus domestica HOM05D002012 ORTHO05D001992 4.2e-38 162.5 254 43.7
HanXRQChr12g0354321 Helianthus annuus HOM05D002012 ORTHO05D001992 5.4e-38 162.2 228 48.2
Sp7g06790 Schrenkiella parvula HOM05D002012 ORTHO05D001992 1.6e-37 160.6 249 43.4
Lalb_Chr11g0074281 Lupinus albus HOM05D002012 ORTHO05D001992 4.6e-37 159.1 252 42.9
AL7G44380 Arabidopsis lyrata HOM05D002012 ORTHO05D001992 1.3e-36 157.5 249 43.0
CDE07G0836 Ceratophyllum demersum HOM05D002012 ORTHO05D001992 1.8e-36 157.1 227 46.3
Lj6g0020899 Lotus japonicus HOM05D002012 ORTHO05D001992 1.8e-36 157.1 249 43.0
Medtr2g041470 Medicago truncatula HOM05D002012 ORTHO05D001992 1.8e-36 157.1 246 43.5
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.3e-36 156.8 250 42.8
C04p43250 Brassica napus HOM05D002012 ORTHO05D001992 2.3e-36 156.8 250 42.8
BolC4t25905H Brassica oleracea HOM05D002012 ORTHO05D001992 2.3e-36 156.8 250 42.8
Ca_26331_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 2.3e-36 156.8 250 42.4
Glyma.17G050100 Glycine max HOM05D002012 ORTHO05D001992 2.3e-36 156.8 246 43.9
CDE06G1025 Ceratophyllum demersum HOM05D002012 ORTHO05D001992 3.9e-36 156.0 227 48.0
Lsat_1_v5_gn_5_141180 Lactuca sativa HOM05D002012 ORTHO05D001992 5.1e-36 155.6 256 45.3
BcaB06g26946 Brassica carinata HOM05D002012 ORTHO05D001992 6.7e-36 155.2 250 42.0
Glyma.15G176600 Glycine max HOM05D002012 ORTHO05D001992 6.7e-36 155.2 252 42.9
Sed0014285 Sechium edule HOM05D002012 ORTHO05D001992 6.7e-36 155.2 219 47.0
A04p09750 Brassica napus HOM05D002012 ORTHO05D001992 1.1e-35 154.5 250 42.4
BraA04t16637Z Brassica rapa HOM05D002012 ORTHO05D001992 1.1e-35 154.5 250 42.4
VMungo1309G2233 Vigna mungo HOM05D002012 ORTHO05D001992 1.1e-35 154.5 250 42.4
CARHR217620 Cardamine hirsuta HOM05D002012 ORTHO05D001992 1.5e-35 154.1 249 42.2
unitig_21.g20983 Utricularia gibba HOM05D002012 ORTHO05D001992 1.5e-35 154.1 267 44.2
AT5G35560 Arabidopsis thaliana HOM05D002012 ORTHO05D001992 3.3e-35 152.9 249 43.0
ECA236G1251 Erigeron canadensis HOM05D002012 ORTHO05D001992 1.3e-34 151.0 237 45.1
Thhalv10003439m.g Eutrema salsugineum HOM05D002012 ORTHO05D001992 2.1e-34 150.2 249 42.2
Phvul.003G131700 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 2.1e-34 150.2 252 42.1
Hund26019 Selenicereus undatus HOM05D002012 ORTHO05D001992 2.8e-34 149.8 220 45.9
Glyma.13G109600 Glycine max HOM05D002012 ORTHO05D001992 3.7e-34 149.4 252 41.7
Lalb_Chr07g0181121 Lupinus albus HOM05D002012 ORTHO05D001992 3.7e-34 149.4 252 40.9
VMungo1215G3349 Vigna mungo HOM05D002012 ORTHO05D001992 4.8e-34 149.1 252 41.7
Lj4g0000518 Lotus japonicus HOM05D002012 ORTHO05D001992 1.1e-33 147.9 246 41.1
Glyma.09G068800 Glycine max HOM05D002012 ORTHO05D001992 4.0e-33 146.0 252 40.9
Psat1g133640 Pisum sativum HOM05D002012 ORTHO05D001992 5.3e-33 145.6 246 41.5
Lalb_Chr13g0299491 Lupinus albus HOM05D002012 ORTHO05D001992 1.2e-32 144.4 239 42.7
Os02g0777100 Oryza sativa ssp. japonica HOM05D002012 ORTHO05D001992 5.8e-32 142.1 242 43.0
Peaxi162Scf00127g00035 Petunia axillaris HOM05D002012 ORTHO05D001992 5.8e-32 142.1 204 45.6
Lsat_1_v5_gn_8_86401 Lactuca sativa HOM05D002012 ORTHO05D001992 9.9e-32 141.4 235 45.5
TPR.G28669 Trifolium pratense HOM05D002012 ORTHO05D001992 1.9e-30 137.1 257 40.9
arahy.Tifrunner.gnm1.ann1.H8KNJ8 Arachis hypogaea HOM05D002012 ORTHO05D001992 2.5e-30 136.7 238 40.8
HanXRQChr06g0178161 Helianthus annuus HOM05D002012 ORTHO05D001992 4.2e-30 136.0 208 45.7
DCAR_028322 Daucus carota HOM05D002012 ORTHO05D001992 9.3e-30 134.8 254 40.9
arahy.Tifrunner.gnm1.ann1.BD8MJQ Arachis hypogaea HOM05D002012 ORTHO05D001992 3.5e-29 132.9 235 40.9
Zm00001eb193170 Zea mays HOM05D002012 ORTHO05D001992 1.3e-28 131.0 242 40.1
arahy.Tifrunner.gnm1.ann1.I4CWBG Arachis hypogaea HOM05D002012 ORTHO05D001992 4.3e-27 125.9 261 37.5
arahy.Tifrunner.gnm1.ann1.TG362X Arachis hypogaea HOM05D002012 ORTHO05D001992 4.3e-27 125.9 261 37.5
Psat4g017920 Pisum sativum HOM05D002012 ORTHO05D001992 7.4e-27 125.2 229 39.3
TPR.G9457 Trifolium pratense HOM05D002012 ORTHO05D001992 7.4e-27 125.2 235 37.9
AUR62025192 Chenopodium quinoa HOM05D002012 ORTHO05D001992 1.3e-26 124.4 231 42.9
Medtr4g125480 Medicago truncatula HOM05D002012 ORTHO05D001992 3.1e-25 119.8 215 39.1
Ca_21316_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 5.3e-25 119.0 251 38.2
CSS0015345 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 3.4e-24 116.3 94 70.2
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 4.5e-24 115.9 97 61.9
Lj9A280T16 Lonicera japonica HOM05D002012 ORTHO05D001992 1.9e-22 110.5 110 58.2
RhsimUnG0010400 Rhododendron simsii HOM05D000879 ORTHO05D001992 1.6e-21 107.5 96 64.6
Haze_25996 Corylus avellana HOM05D002012 ORTHO05D001992 6.3e-18 95.5 169 39.6
Psat5g098520 Pisum sativum HOM05D002012 ORTHO05D001992 9.0e-17 91.7 144 40.3
AUR62028982 Chenopodium quinoa HOM05D002012 ORTHO05D001992 1.2e-16 91.3 171 43.3
Actinidia39668 Actinidia chinensis HOM05D002012 ORTHO05D001992 2.2e-15 87.0 164 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1253 Anthoceros agrestis HOM05D002012 ORTHO05D001992 5.0e-15 85.9 230 33.5
Rhsim04G0079000 Rhododendron simsii HOM05D000879 ORTHO05D002043 1.4e-14 84.3 96 53.1
Rhsim04G0079500 Rhododendron simsii HOM05D002012 ORTHO05D001992 1.9e-14 84.0 56 73.2
Psat3g018320 Pisum sativum HOM05D002012 ORTHO05D001992 3.2e-14 83.2 101 46.5
Prupe.7G200900 Prunus persica HOM05D002012 ORTHO05D001992 1.5e-11 74.3 131 40.5
Atru.chr7.1695 Acer truncatum HOM05D002012 ORTHO05D001992 2.0e-11 73.9 122 42.6
Rhsim05G0033300 Rhododendron simsii HOM05D000879 ORTHO05D001992 3.3e-11 73.2 112 46.4
Psat0s2767g0040 Pisum sativum HOM05D002012 ORTHO05D001992 4.3e-11 72.8 102 45.1
SMO228G0209 Selaginella moellendorffii HOM05D002012 ORTHO05D001992 7.4e-11 72.0 233 29.2
RhsimUnG0220900 Rhododendron simsii HOM05D000879 ORTHO05D001992 1.4e-09 67.8 113 44.2
CSS0007339 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 3.1e-09 66.6 72 55.6
Pp3c9_25650 Physcomitrium patens HOM05D002012 ORTHO05D001992 2.6e-08 63.5 221 29.4
Manes.03G039600 Manihot esculenta HOM05D002012 ORTHO05D001992 1.0e-07 61.6 69 56.5
Mapoly0083s0022 Marchantia polymorpha HOM05D002012 ORTHO05D001992 1.3e-07 61.2 237 27.8
CSS0018876 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 2.9e-07 60.1 81 48.1
PGR044G2406 Punica granatum HOM05D002012 ORTHO05D001992 2.9e-07 60.1 168 27.4
HPP92_007985 Vanilla planifolia HOM05D002012 ORTHO05D001992 2.9e-07 60.1 72 51.4
MBI10_g39248_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 3.8e-07 59.7 221 30.8
CiPaw.03G272000 Carya illinoinensis HOM05D002012 ORTHO05D001992 5.0e-07 59.3 199 27.6
Phvul.001G167000 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 6.5e-07 58.9 197 27.9
VMungo1383G3347 Vigna mungo HOM05D002012 ORTHO05D001992 6.5e-07 58.9 198 26.8
Lj1C76G4 Lonicera japonica HOM05D002012 ORTHO05D001992 4.2e-06 56.2 210 24.8
Manes.12G041101 Manihot esculenta HOM05D002012 ORTHO05D001992 4.2e-06 56.2 198 25.8
Nitab4.5_0003167g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 4.2e-06 56.2 214 26.2
Cc01_g17700 Coffea canephora HOM05D002012 ORTHO05D001992 5.5e-06 55.8 221 24.4
Potri.002G255500 Populus trichocarpa HOM05D002012 ORTHO05D001992 5.5e-06 55.8 213 25.8
vmacro02714 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 5.5e-06 55.8 187 26.7
CAN.G771.43 Capsicum annuum HOM05D002012 ORTHO05D001992 7.2e-06 55.5 211 26.1
Peaxi162Scf00517g00034 Petunia axillaris HOM05D002012 ORTHO05D001992 7.2e-06 55.5 226 26.1
Nitab4.5_0002538g0090 Nicotiana tabacum HOM05D002012 ORTHO05D001992 9.4e-06 55.1 214 26.2


User provided reference genes

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