Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 6.4e-149 530.8 283 100.0
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.1e-113 413.7 276 80.8
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.7e-112 409.8 276 80.4
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 1.3e-109 400.2 283 78.1
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.6e-99 366.7 325 65.2
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.6e-99 365.5 325 65.5
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 1.2e-89 334.0 282 68.4
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 5.6e-84 315.1 278 64.7
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.3e-77 293.1 284 59.2
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 6.6e-77 291.6 284 58.8
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 7.3e-76 288.1 278 58.6
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 2.3e-74 283.1 282 58.9
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.2e-73 280.8 280 57.9
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 2.0e-73 280.0 282 58.5
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 3.4e-73 279.3 280 58.6
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.7e-72 276.9 286 57.0
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 2.2e-72 276.6 268 61.2
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 6.4e-72 275.0 283 56.2
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 6.4e-72 275.0 285 57.5
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 5.4e-71 271.9 284 57.4
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 5.4e-71 271.9 285 57.5
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 6.0e-70 268.5 281 55.2
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 7.8e-70 268.1 282 53.9
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 1.3e-69 267.3 279 53.8
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 2.3e-69 266.5 283 53.7
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 3.0e-69 266.2 284 56.0
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 3.0e-69 266.2 280 53.6
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.5e-68 263.8 277 58.5
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 4.3e-68 262.3 285 53.7
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.2e-67 260.8 292 52.4
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.1e-67 260.0 287 55.7
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 3.6e-67 259.2 284 53.2
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 6.2e-67 258.5 284 52.5
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 1.1e-66 257.7 279 52.3
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 1.1e-66 257.7 281 52.7
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.4e-66 257.3 277 57.0
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 3.1e-66 256.1 281 51.2
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 5.2e-66 255.4 320 50.6
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.5e-65 253.8 296 54.1
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 2.6e-65 253.1 285 52.6
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.4e-65 252.7 285 52.6
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 7.5e-65 251.5 281 53.0
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 8.3e-64 248.1 280 50.7
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.1e-63 247.7 304 50.0
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 1.4e-63 247.3 281 50.5
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 4.1e-63 245.7 302 49.7
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.2e-62 244.2 279 53.0
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 1.6e-62 243.8 292 50.0
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.6e-62 243.8 302 48.3
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 2.1e-62 243.4 281 53.0
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 2.7e-62 243.0 275 55.3
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.7e-61 240.4 298 50.0
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 2.3e-61 240.0 296 48.6
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 2.3e-61 240.0 296 48.6
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 2.3e-61 240.0 296 48.6
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 3.0e-61 239.6 282 53.9
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 3.9e-61 239.2 280 53.2
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 5.1e-61 238.8 299 48.8
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 8.6e-61 238.0 282 53.5
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.5e-60 237.3 279 52.7
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.5e-60 237.3 282 50.4
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 2.5e-60 236.5 292 48.3
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 2.5e-60 236.5 292 48.3
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 3.3e-60 236.1 297 47.8
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.2e-59 234.2 294 48.6
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 1.6e-59 233.8 281 49.8
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 1.6e-59 233.8 187 65.8
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.8e-59 233.0 299 47.5
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 8.1e-59 231.5 285 50.9
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 8.1e-59 231.5 286 51.7
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 1.4e-58 230.7 286 49.3
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.8e-58 230.3 289 49.5
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 6.8e-58 228.4 283 50.5
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 1.2e-57 227.6 279 52.3
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 1.2e-57 227.6 297 47.8
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.6e-57 226.5 318 46.2
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.6e-57 226.5 240 59.2
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 4.4e-57 225.7 279 48.4
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 4.4e-57 225.7 281 48.8
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 1.7e-56 223.8 297 46.1
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.7e-56 223.8 278 48.9
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.2e-56 223.4 297 46.1
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 8.4e-56 221.5 322 44.7
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 2.4e-55 219.9 275 49.5
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 5.4e-55 218.8 287 49.5
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 3.5e-54 216.1 282 47.2
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 4.6e-54 215.7 250 53.2
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 7.8e-54 214.9 297 44.1
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 1.0e-53 214.5 287 49.8
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.0e-53 213.0 281 48.4
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.9e-53 212.6 281 48.8
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 6.6e-53 211.8 278 47.1
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 6.6e-53 211.8 168 63.1
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.9e-52 210.3 281 48.0
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 4.3e-52 209.1 248 50.4
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-51 207.6 284 49.3
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 2.1e-51 206.8 275 46.9
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 8.1e-51 204.9 281 44.5
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.4e-50 203.4 262 47.3
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 2.4e-50 203.4 285 46.0
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 6.9e-50 201.8 274 48.5
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 9.0e-50 201.4 277 45.1
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 4.4e-49 199.1 251 51.4
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 4.9e-48 195.7 277 43.7
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 2.4e-47 193.4 245 52.2
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 1.6e-46 190.7 259 49.4
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.6e-43 179.5 244 46.7
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.4e-42 177.6 245 48.6
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 2.2e-40 170.2 260 47.7
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 1.2e-38 164.5 187 50.8
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 3.5e-38 162.9 242 48.3
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 2.3e-37 160.2 277 38.6
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.5e-36 156.8 276 37.0
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 7.4e-36 155.2 276 38.0
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 9.6e-36 154.8 164 46.3
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 1.3e-35 154.5 102 74.5
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 1.8e-34 150.6 166 48.8
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 4.5e-33 146.0 213 46.5
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 5.8e-33 145.6 273 39.2
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.3e-32 144.4 96 72.9
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 8.4e-32 141.7 310 39.0
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 5.5e-31 139.0 96 69.8
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 2.7e-30 136.7 186 47.3
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 8.7e-29 131.7 211 43.6
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 1.4e-26 124.4 216 43.1
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 1.8e-21 107.5 232 30.6
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.0e-21 106.7 209 40.2
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 5.1e-21 105.9 178 46.6
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 6.7e-21 105.5 276 29.0
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 4.8e-19 99.4 188 44.1
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 4.8e-19 99.4 182 33.5
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 6.3e-19 99.0 276 27.9
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 1.3e-16 91.3 146 34.9
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.1e-15 88.2 152 34.9
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.5e-15 87.0 151 33.8
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 5.5e-15 85.9 75 69.3
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.7e-14 83.6 57 75.4
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 4.6e-14 82.8 187 29.9
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 8.8e-13 78.6 126 47.6
Gorai.005G157900 Gossypium raimondii HOM05D001340 ORTHO05D005342 3.3e-12 76.6 102 47.1
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 3.3e-12 76.6 66 51.5
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 4.3e-12 76.3 128 32.0
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 2.2e-08 63.9 71 54.9


User provided reference genes

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