Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.4e-81 306.2 154 100.0
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.7e-40 169.1 91 89.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 6.0e-40 167.9 102 77.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.9e-39 165.2 92 83.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.9e-38 162.9 96 82.3
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.5e-38 162.5 104 73.1
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-38 161.8 89 85.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.6e-38 161.4 98 79.6
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 5.6e-38 161.4 98 79.6
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.1e-37 159.5 89 85.4
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.1e-37 159.5 89 83.1
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.1e-37 159.5 104 73.1
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.1e-37 159.5 89 84.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 4.7e-37 158.3 100 76.0
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 6.2e-37 157.9 100 76.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.9e-36 154.1 87 81.6
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.9e-36 154.1 87 81.6
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 8.9e-36 154.1 87 81.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.2e-35 153.7 98 73.5
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.0e-35 152.9 98 73.5
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.0e-35 152.9 91 80.2
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 2.6e-35 152.5 88 78.4
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.4e-35 152.1 92 81.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 3.4e-35 152.1 90 80.0
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 3.4e-35 152.1 89 79.8
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.4e-35 151.8 88 79.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.8e-35 151.4 89 79.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.8e-35 151.4 95 76.8
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.8e-35 151.4 89 79.8
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 7.6e-35 151.0 98 75.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.3e-34 150.2 95 74.7
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-34 150.2 90 80.0
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.7e-34 149.8 88 78.4
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.7e-34 149.8 95 73.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 2.2e-34 149.4 89 76.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-34 149.1 90 76.7
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.9e-34 149.1 83 81.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.9e-34 149.1 83 81.9
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 3.7e-34 148.7 89 78.7
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.9e-34 148.3 91 74.7
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 8.4e-34 147.5 89 77.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 8.4e-34 147.5 88 78.4
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 8.4e-34 147.5 89 76.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.1e-33 147.1 85 80.0
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.1e-33 147.1 85 80.0
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.1e-33 147.1 90 76.7
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.4e-33 146.7 90 77.8
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.4e-33 146.0 89 75.3
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.4e-33 146.0 88 73.9
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.4e-33 146.0 91 74.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.2e-33 145.6 104 68.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 3.2e-33 145.6 89 77.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 3.2e-33 145.6 90 78.9
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-33 145.2 89 77.5
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-33 145.2 89 77.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 4.1e-33 145.2 91 76.9
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 4.1e-33 145.2 90 76.7
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 4.1e-33 145.2 90 76.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 4.1e-33 145.2 89 75.3
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 9.2e-33 144.1 87 75.9
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.2e-33 144.1 89 76.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 9.2e-33 144.1 117 64.1
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 9.2e-33 144.1 91 73.6
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.2e-32 143.7 90 71.1
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.6e-32 143.3 93 75.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.6e-32 143.3 105 68.6
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-32 143.3 93 71.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.1e-32 142.9 83 79.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.7e-32 142.5 88 75.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.6e-32 141.7 92 73.9
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 4.6e-32 141.7 85 77.6
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.0e-32 141.4 90 73.3
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 6.0e-32 141.4 85 75.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.0e-31 140.6 90 73.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.0e-31 140.6 90 73.3
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-31 140.2 85 75.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.7e-31 139.8 87 77.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.3e-31 139.4 99 67.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-31 139.0 90 71.1
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 3.0e-31 139.0 110 66.4
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.0e-31 139.0 88 75.0
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.9e-31 138.7 91 70.3
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.9e-31 138.7 91 71.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 5.1e-31 138.3 80 78.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 8.6e-31 137.5 104 63.5
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-30 136.7 90 68.9
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-30 136.7 90 68.9
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-30 136.3 104 63.5
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.9e-30 136.3 104 63.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.9e-30 136.3 90 68.9
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.3e-30 135.6 100 66.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.3e-30 135.6 107 61.7
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 3.3e-30 135.6 90 68.9
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 3.3e-30 135.6 90 70.0
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 4.3e-30 135.2 85 72.9
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.3e-30 134.4 100 65.0
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 7.3e-30 134.4 86 72.1
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 9.6e-30 134.0 89 68.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.2e-29 133.7 91 68.1
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.6e-29 133.3 89 68.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.1e-29 132.9 83 72.3
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.8e-29 132.5 84 71.4
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-29 132.1 85 70.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.6e-29 132.1 85 69.4
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.6e-29 132.1 148 49.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.7e-29 131.7 124 56.5
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 6.2e-29 131.3 78 76.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.2e-29 131.3 85 69.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 6.2e-29 131.3 89 69.7
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 8.1e-29 131.0 85 72.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-28 130.6 88 70.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 8.9e-28 127.5 91 68.1
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-27 126.7 85 69.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-27 126.7 101 63.4
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.5e-27 126.7 131 53.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.5e-27 126.7 89 66.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.5e-27 126.7 81 72.8
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 4.4e-27 125.2 125 52.8
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 4.4e-27 125.2 105 59.0
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.4e-27 125.2 189 41.8
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.8e-27 124.8 89 65.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.7e-26 123.2 114 54.4
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.8e-26 122.1 82 65.9
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.8e-26 122.1 82 65.9
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 8.4e-26 120.9 92 63.0
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 8.4e-26 120.9 84 75.0
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.4e-25 120.2 89 65.2
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.1e-25 117.9 82 64.6
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 7.1e-25 117.9 83 67.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 7.1e-25 117.9 83 67.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.5e-24 115.5 65 81.5
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.3e-23 112.8 78 67.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.9e-23 112.1 95 61.1
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.1e-23 111.7 87 66.7
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.7e-23 110.9 89 60.7
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.6e-21 105.5 89 60.7
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 6.2e-21 104.8 78 69.2
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.8e-20 103.2 77 66.2
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.6e-19 99.4 66 71.2
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.9e-18 95.1 68 66.2
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.9e-17 93.2 63 69.8
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.4e-17 92.8 69 62.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.2e-17 92.4 66 65.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-15 86.3 77 51.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-15 86.3 77 51.9
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-15 86.3 74 55.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.3e-15 86.3 50 82.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.3e-15 86.3 51 78.4
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 5.1e-15 85.1 91 47.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 8.7e-15 84.3 68 58.8
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.3e-13 80.5 60 65.0
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.6e-13 80.1 55 65.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.1e-13 79.7 68 48.5
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-13 79.7 61 65.6
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 5.3e-12 75.1 47 74.5
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 4.5e-11 72.0 68 45.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.9e-10 68.6 46 69.6
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.4e-09 66.2 63 54.0
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.3e-09 64.3 50 66.0
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.1e-08 63.2 44 72.7
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 3.0e-07 59.3 72 40.3
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 3.3e-06 55.8 65 38.5
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 3.3e-06 55.8 65 38.5


User provided reference genes

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