Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 4.6e-186 654.4 340 100.0
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-142 510.0 324 81.2
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-142 509.2 325 80.6
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-141 506.1 319 79.9
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.7e-141 505.8 320 79.7
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.1e-139 500.4 333 76.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 4.3e-139 498.4 325 77.8
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.1e-131 473.8 324 75.9
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 9.8e-128 460.7 325 73.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-124 450.7 324 70.1
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 3.9e-124 448.7 324 71.3
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.9e-124 448.7 320 71.6
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.5e-123 446.0 320 70.9
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.3e-123 445.7 320 70.9
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 9.5e-123 444.1 324 69.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 4.7e-122 441.8 324 70.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.8e-121 439.9 321 69.2
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 3.1e-121 439.1 331 68.3
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 4.0e-121 438.7 324 69.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.2e-120 437.2 324 68.8
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.0e-120 436.4 313 71.2
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 4.4e-120 435.3 324 71.3
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 7.6e-120 434.5 319 68.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 8.3e-119 431.0 323 66.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.4e-118 429.5 323 65.0
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.5e-117 425.6 320 69.4
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 6.0e-117 424.9 320 68.1
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.5e-115 420.2 310 66.8
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.5e-115 419.5 322 66.8
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 9.6e-115 417.5 316 66.1
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 9.6e-115 417.5 316 66.1
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.6e-114 416.8 313 70.0
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 4.7e-114 415.2 319 64.3
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.2e-113 411.8 325 65.8
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 6.8e-113 411.4 320 64.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.2e-112 410.6 319 65.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.5e-112 410.2 325 65.5
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.4e-112 408.7 330 65.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 7.6e-112 407.9 319 66.1
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.6e-112 407.9 319 63.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.7e-111 406.8 325 63.1
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 2.9e-111 406.0 324 63.3
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 4.9e-111 405.2 318 66.4
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 4.9e-111 405.2 319 63.0
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.4e-111 404.8 322 65.5
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.1e-110 404.1 324 63.3
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-110 404.1 319 63.0
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.9e-110 403.3 319 65.2
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.2e-110 402.1 319 62.7
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 7.1e-110 401.4 320 64.7
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.6e-109 400.2 325 63.7
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.6e-109 400.2 287 68.6
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.7e-109 399.4 323 64.1
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.1e-107 394.0 326 62.3
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.5e-107 393.7 303 64.4
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.9e-107 393.3 320 62.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.5e-107 392.9 310 62.6
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.3e-107 392.5 329 61.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 3.3e-107 392.5 344 58.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-105 387.5 319 61.4
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.1e-105 387.5 326 61.0
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.0e-105 385.6 325 63.4
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 4.0e-105 385.6 325 60.6
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.4e-104 382.5 324 60.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.3e-103 380.6 310 62.6
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.7e-103 380.2 336 59.2
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.2e-103 379.8 329 61.7
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.9e-103 379.4 326 59.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.4e-102 376.3 325 61.5
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 3.2e-102 375.9 335 60.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 5.4e-102 375.2 320 62.2
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.2e-101 374.0 328 59.5
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.5e-101 372.5 319 60.8
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.3e-100 369.8 321 60.4
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.0e-100 369.4 327 58.7
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.9e-100 369.0 320 60.0
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.9e-100 369.0 318 60.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.1e-99 367.5 318 60.4
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.5e-99 366.3 321 61.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 5.6e-99 365.2 320 59.7
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.3e-99 364.8 310 61.6
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 7.3e-99 364.8 318 60.1
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 9.6e-99 364.4 320 58.8
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-98 363.6 321 60.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.6e-98 363.6 313 61.7
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-97 360.9 322 59.9
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.8e-97 360.1 362 55.5
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.0e-97 359.0 324 59.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 4.0e-97 359.0 326 57.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.0e-97 359.0 331 57.4
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 5.3e-97 358.6 331 57.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 9.0e-97 357.8 320 57.5
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.0e-96 356.7 321 58.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.7e-95 353.6 362 52.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.9e-95 352.8 322 58.4
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 3.8e-95 352.4 321 58.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.4e-94 350.5 401 51.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.9e-94 350.1 324 57.4
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.2e-94 349.4 335 56.7
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.2e-93 347.4 320 58.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.5e-93 345.9 321 57.9
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 3.5e-93 345.9 321 57.9
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 6.0e-93 345.1 323 57.9
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.3e-92 344.0 322 57.8
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 3.0e-92 342.8 322 57.5
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-91 340.9 321 57.6
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 5.6e-91 338.6 308 57.5
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.6e-91 338.6 316 57.6
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.6e-91 338.6 328 54.0
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 7.4e-91 338.2 326 56.4
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 9.6e-91 337.8 422 48.1
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 3.7e-90 335.9 332 56.0
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.1e-90 334.7 320 55.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-89 334.0 319 56.7
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.8e-89 333.6 358 52.5
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 5.3e-89 332.0 356 53.1
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 5.3e-89 332.0 326 53.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 9.0e-89 331.3 324 57.4
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-87 327.8 214 79.4
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.9e-87 326.2 214 79.0
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 5.5e-86 322.0 241 66.4
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 3.5e-85 319.3 318 54.7
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 7.9e-85 318.2 309 56.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 7.9e-85 318.2 309 56.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 7.9e-85 318.2 250 65.2
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-84 317.0 322 55.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.8e-84 317.0 309 56.0
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.1e-81 307.8 324 52.5
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.9e-81 305.1 492 41.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.5e-80 303.9 300 55.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.5e-80 302.4 432 42.1
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-79 300.4 312 52.6
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.1e-77 293.5 326 50.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.3e-74 284.3 310 51.6
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 3.7e-74 282.7 315 46.3
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.5e-70 268.9 170 83.5
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.4e-67 258.5 189 75.1
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.7e-66 257.3 200 66.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.6e-61 239.6 269 52.4
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 6.1e-61 238.8 163 73.0
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 7.9e-61 238.4 339 38.6
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.9e-61 238.4 334 40.4
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 5.7e-59 232.3 168 67.9
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.4e-59 231.9 188 61.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 9.1e-57 224.9 158 68.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 3.8e-55 219.5 200 56.0
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-53 213.4 161 67.1
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.7e-53 212.6 328 39.9
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.8e-52 210.7 332 36.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.2e-52 209.1 328 38.7
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 5.7e-51 205.7 317 37.5
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-49 201.4 124 82.3
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-49 200.7 124 83.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.1e-49 199.5 152 71.7
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.1e-49 199.5 327 36.7
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 9.1e-49 198.4 156 59.6
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.3e-47 194.5 156 58.3
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.7e-47 194.1 162 63.0
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.6e-45 187.6 127 74.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-44 184.5 120 76.7
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-44 183.7 110 83.6
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.0e-44 183.3 120 75.8
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-43 181.0 120 75.8
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.7e-42 177.6 124 70.2
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.4e-41 174.5 252 42.1
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.5e-40 169.5 323 31.9
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.8e-39 166.4 133 59.4
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.2e-37 161.4 120 70.0
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 3.0e-36 156.8 134 61.9
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 5.7e-35 152.5 134 59.7
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 9.1e-33 145.2 173 46.8
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.7e-26 123.2 80 75.0
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 5.2e-20 102.8 78 60.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.5e-19 101.3 223 30.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.0e-16 90.9 85 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.5e-16 90.1 305 28.9


User provided reference genes

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