Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 1.6e-177 625.9 316 100.0
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 8.8e-139 497.3 315 80.0
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 8.8e-139 497.3 315 80.0
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 9.4e-133 477.2 316 77.8
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.2e-127 460.3 308 72.7
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.0e-126 457.2 348 70.7
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 2.5e-125 452.6 309 73.8
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 1.2e-124 450.3 313 71.6
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 2.8e-124 449.1 310 72.3
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.0e-123 447.2 316 72.2
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.2e-122 443.7 315 72.7
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 4.4e-122 441.8 315 71.1
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 1.7e-121 439.9 309 71.5
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 1.7e-121 439.9 308 71.1
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 1.1e-120 437.2 308 73.4
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 2.4e-120 436.0 316 71.5
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 9.2e-120 434.1 313 70.0
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 1.2e-119 433.7 311 68.5
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 4.5e-119 431.8 309 70.2
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 4.5e-119 431.8 314 70.1
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 5.9e-119 431.4 316 69.0
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 1.0e-118 430.6 286 73.8
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 1.7e-118 429.9 311 70.7
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 2.9e-118 429.1 315 68.9
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 6.6e-118 427.9 316 69.0
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 1.9e-117 426.4 313 69.6
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 4.3e-117 425.2 314 67.5
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 9.5e-117 424.1 315 67.3
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.2e-116 423.7 308 69.8
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 2.8e-116 422.5 307 70.4
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 6.1e-116 421.4 310 68.7
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.0e-115 420.6 301 71.8
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.8e-115 419.9 315 67.6
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 4.0e-115 418.7 315 67.9
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 5.2e-115 418.3 315 67.6
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 8.9e-115 417.5 309 67.6
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 2.0e-114 416.4 315 66.7
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 3.4e-114 415.6 315 67.0
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.4e-114 415.6 301 71.1
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 7.5e-114 414.5 285 74.7
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.3e-113 413.7 316 66.8
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 1.7e-113 413.3 318 66.4
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 1.1e-112 410.6 313 66.1
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 1.1e-112 410.6 309 68.0
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 1.4e-112 410.2 316 64.6
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 2.4e-112 409.5 318 65.7
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 2.4e-112 409.5 288 72.6
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 3.2e-112 409.1 318 66.0
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 3.2e-112 409.1 309 67.0
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 5.4e-112 408.3 315 67.9
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 1.2e-111 407.1 315 65.7
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.7e-111 406.0 268 77.2
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.6e-111 405.2 298 70.5
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 4.6e-111 405.2 343 62.7
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 4.6e-111 405.2 315 66.7
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.3e-110 403.7 253 79.8
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.3e-110 403.7 315 66.3
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 3.9e-110 402.1 314 67.8
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 6.6e-110 401.4 261 76.2
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 1.9e-109 399.8 303 66.3
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 4.3e-109 398.7 315 67.3
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 5.6e-109 398.3 321 65.4
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 7.3e-109 397.9 316 66.1
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 4.7e-108 395.2 304 65.5
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 8.0e-108 394.4 270 73.0
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 1.8e-107 393.3 304 65.5
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 2.0e-106 389.8 269 71.7
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 3.4e-106 389.0 305 66.2
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 4.4e-106 388.7 302 64.9
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 7.5e-106 387.9 303 64.4
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 7.5e-106 387.9 261 73.2
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.7e-105 386.7 284 70.8
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.1e-104 384.0 303 64.7
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.1e-104 384.0 307 64.8
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 2.4e-104 382.9 255 75.3
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 7.1e-104 381.3 295 64.7
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.6e-103 380.2 260 74.6
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 6.0e-103 378.3 300 64.3
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 1.7e-102 376.7 262 72.5
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 2.3e-102 376.3 306 65.4
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 3.0e-102 375.9 260 73.8
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 5.1e-102 375.2 277 68.2
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 9.5e-101 370.9 323 61.3
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 2.1e-100 369.8 311 61.4
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 6.2e-100 368.2 251 70.9
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 8.9e-99 364.4 311 60.5
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.5e-98 363.6 300 61.3
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 2.6e-98 362.8 309 58.9
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 2.9e-97 359.4 315 60.0
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 9.2e-96 354.4 285 63.2
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 8.6e-94 347.8 270 63.7
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 2.8e-92 342.8 264 63.6
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 8.1e-92 341.3 316 56.0
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 5.2e-91 338.6 274 65.3
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 8.7e-86 321.2 383 51.4
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 3.3e-85 319.3 322 56.2
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 7.3e-85 318.2 248 65.3
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 1.6e-84 317.0 323 54.5
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.1e-84 316.6 241 67.2
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.4e-82 309.3 213 77.0
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 1.1e-80 304.3 255 62.7
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 2.1e-79 300.1 264 56.8
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 1.7e-78 297.0 249 63.9
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 8.4e-73 278.1 190 69.5
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 1.8e-67 260.4 163 79.8
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 4.5e-66 255.8 174 71.8
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 1.4e-64 250.8 260 50.8
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.8e-62 243.8 164 76.8
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 3.9e-62 242.7 260 49.6
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 3.3e-61 239.6 295 46.8
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 7.6e-58 228.4 161 71.4
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.4e-57 224.9 146 77.4
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 1.6e-55 220.7 282 41.5
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 2.3e-46 190.3 215 52.6
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 5.7e-37 159.1 121 66.9
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 1.4e-35 154.5 144 56.9
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.8e-35 154.1 172 54.1
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 1.8e-35 154.1 277 35.7
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.7e-34 148.7 158 56.3
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 7.2e-32 142.1 157 53.5
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.7e-31 140.2 82 81.7
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 4.0e-30 136.3 167 49.7
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 9.7e-29 131.7 109 65.1
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.0e-25 121.7 214 36.4
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 1.9e-24 117.5 95 63.2
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 1.8e-22 110.9 79 68.4
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 4.0e-22 109.8 301 31.9
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 2.6e-21 107.1 69 71.0
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-20 104.8 68 70.6
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.8e-06 57.8 91 38.5


User provided reference genes

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