Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 7.9e-67 256.9 125 100.0
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 8.0e-51 203.8 142 74.6
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 3.7e-48 194.9 125 77.6
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 3.1e-47 191.8 128 74.2
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 5.5e-44 181.0 126 73.8
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.8e-40 168.7 118 66.9
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 6.3e-40 167.5 122 63.9
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 6.3e-40 167.5 123 65.0
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 6.3e-40 167.5 118 66.1
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.4e-39 166.4 118 66.1
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.2e-38 163.3 132 64.4
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.6e-38 162.9 118 66.1
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.7e-38 162.2 133 63.2
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 3.5e-38 161.8 118 64.4
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.3e-37 159.1 129 63.6
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.9e-37 158.7 125 64.8
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.9e-37 158.7 115 66.1
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 5.0e-37 157.9 117 64.1
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 5.0e-37 157.9 122 63.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 5.0e-37 157.9 119 63.9
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 8.6e-37 157.1 117 62.4
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.9e-36 156.0 127 62.2
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.5e-36 155.6 129 62.8
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 4.2e-36 154.8 116 62.1
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 5.5e-36 154.5 119 63.0
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 7.2e-36 154.1 119 60.5
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 7.2e-36 154.1 124 61.3
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 7.2e-36 154.1 119 62.2
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.6e-35 152.9 93 83.9
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.6e-35 152.9 123 62.6
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.1e-35 152.5 119 60.5
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.1e-35 152.5 119 63.0
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.1e-35 152.5 130 62.3
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 3.6e-35 151.8 124 62.1
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 4.7e-35 151.4 119 60.5
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 4.7e-35 151.4 119 60.5
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 4.7e-35 151.4 119 60.5
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 6.1e-35 151.0 118 62.7
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.0e-34 150.2 119 59.7
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.8e-34 149.4 121 59.5
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.8e-34 149.4 136 55.1
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.8e-34 149.4 120 63.3
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 2.3e-34 149.1 120 60.0
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 2.3e-34 149.1 134 60.4
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.0e-34 148.7 119 58.8
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 4.0e-34 148.3 119 58.8
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 6.8e-34 147.5 135 57.8
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 8.9e-34 147.1 119 58.8
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.5e-33 146.4 117 59.8
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.5e-33 146.4 120 61.7
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 3.4e-33 145.2 117 60.7
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 4.4e-33 144.8 115 61.7
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 4.4e-33 144.8 122 57.4
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 5.7e-33 144.4 123 56.1
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.7e-33 144.4 116 58.6
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 9.8e-33 143.7 122 60.7
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 9.8e-33 143.7 131 55.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.7e-32 142.9 120 59.2
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 2.2e-32 142.5 119 60.5
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.8e-32 142.1 113 60.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 3.7e-32 141.7 126 57.9
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.9e-32 141.4 114 64.9
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 6.3e-32 141.0 122 59.8
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 8.3e-32 140.6 117 62.4
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 8.3e-32 140.6 116 59.5
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.1e-31 140.2 126 57.1
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.1e-31 140.2 117 62.4
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.1e-31 140.2 113 60.2
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.4e-31 139.8 116 58.6
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.4e-31 139.8 125 57.6
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.1e-31 138.7 113 60.2
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 5.4e-31 137.9 116 56.0
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 9.2e-31 137.1 113 58.4
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 9.2e-31 137.1 129 55.8
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 9.2e-31 137.1 117 59.0
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.2e-31 137.1 129 55.8
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.6e-30 136.3 117 61.5
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.6e-30 136.3 124 56.5
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.7e-30 135.6 117 59.8
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 2.7e-30 135.6 129 54.3
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.5e-30 135.2 121 57.9
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 3.5e-30 135.2 129 56.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 4.5e-30 134.8 117 55.6
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 5.9e-30 134.4 88 69.3
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.9e-30 134.4 123 58.5
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.3e-29 133.3 124 54.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.3e-29 133.3 121 56.2
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 2.3e-29 132.5 122 57.4
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 3.8e-29 131.7 115 52.2
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.1e-28 130.2 121 56.2
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.1e-28 130.2 128 52.3
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 4.3e-28 128.3 114 57.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 4.3e-28 128.3 117 54.7
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 7.3e-28 127.5 131 52.7
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.2e-27 126.7 117 56.4
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.6e-27 126.3 117 56.4
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 2.8e-27 125.6 122 54.1
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.8e-26 122.9 120 50.8
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 1.8e-26 122.9 115 53.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 4.0e-26 121.7 117 52.1
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 4.0e-26 121.7 122 52.5
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.0e-26 121.7 117 56.4
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 5.2e-26 121.3 125 51.2
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.4e-25 118.2 117 49.6
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.5e-25 117.5 126 47.6
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.7e-24 115.2 119 46.2
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 3.7e-24 115.2 125 50.4
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 9.2e-23 110.5 114 52.6
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 9.2e-23 110.5 136 49.3
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.2e-22 110.2 128 47.7
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 7.8e-22 107.5 105 49.5
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.0e-21 107.1 66 68.2
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.3e-21 106.7 118 48.3
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 3.0e-21 105.5 129 42.6
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 6.6e-21 104.4 118 47.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 7.3e-20 100.9 115 47.8
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 9.5e-20 100.5 101 51.5
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.1e-19 99.4 116 45.7
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 4.7e-19 98.2 129 41.9
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 8.0e-19 97.4 88 53.4
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.4e-17 91.7 111 43.2
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.3e-16 90.1 115 38.3
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 3.2e-15 85.5 109 41.3
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 9.2e-15 84.0 64 53.1
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.0e-13 80.5 64 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.9e-12 76.3 118 37.3
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.9e-12 76.3 127 32.3
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 3.3e-12 75.5 74 48.6
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 3.3e-12 75.5 105 37.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.6e-12 74.7 50 66.0
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 7.3e-12 74.3 93 38.7
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.6e-11 73.2 64 48.4
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.1e-11 72.8 124 37.9
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.1e-11 72.8 127 31.5
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 6.2e-11 71.2 124 37.1
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.8e-10 69.7 46 65.2
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 5.2e-10 68.2 59 50.8
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.0e-09 66.2 65 46.2
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 5.8e-09 64.7 61 47.5
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.7e-08 63.2 105 36.2
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.9e-08 62.4 52 55.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-07 60.5 49 49.0
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 3.2e-07 58.9 48 45.8


User provided reference genes

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