Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 5.7e-107 391.0 201 100.0
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 5.3e-89 331.3 218 82.1
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.3e-54 215.7 248 56.5
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 4.3e-54 215.3 238 56.3
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.7e-50 203.4 236 53.4
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 8.6e-47 191.0 206 54.4
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 9.5e-46 187.6 241 48.5
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.2e-45 187.2 236 52.5
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.8e-44 183.3 240 48.8
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 4.0e-44 182.2 241 46.9
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.0e-43 179.9 238 51.3
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.4e-43 179.1 243 48.6
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 2.2e-42 176.4 240 46.7
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.4e-41 172.9 241 48.1
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 5.4e-41 171.8 241 45.6
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 9.2e-41 171.0 242 47.5
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 9.2e-41 171.0 244 45.5
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 3.5e-40 169.1 236 46.2
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 4.6e-40 168.7 269 44.2
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.0e-40 168.3 171 56.1
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.3e-39 167.2 234 45.7
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.3e-39 166.4 244 45.1
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.3e-39 166.4 169 55.6
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 3.0e-39 166.0 237 43.5
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 3.0e-39 166.0 169 55.6
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.9e-39 165.6 251 44.2
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 5.1e-39 165.2 195 49.2
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 5.1e-39 165.2 241 44.4
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 6.6e-39 164.9 169 55.0
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 8.6e-39 164.5 244 45.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.9e-38 163.3 243 44.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.9e-38 163.3 242 44.6
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.9e-38 163.3 168 53.0
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.9e-38 163.3 242 45.9
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.5e-38 162.9 237 43.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 3.3e-38 162.5 242 43.4
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 7.3e-38 161.4 241 44.0
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 9.5e-38 161.0 239 41.4
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 9.5e-38 161.0 232 43.1
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.2e-37 160.6 244 41.8
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.2e-37 160.6 210 48.6
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.6e-37 160.2 224 47.3
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.8e-37 159.5 237 44.3
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.6e-37 159.1 160 53.1
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 3.6e-37 159.1 293 39.6
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.6e-37 159.1 208 47.1
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 8.1e-37 157.9 229 43.2
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.8e-36 156.8 243 42.8
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.8e-36 156.8 161 54.0
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.8e-36 156.8 233 42.9
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.3e-36 156.4 234 42.7
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.0e-36 155.6 230 41.3
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 4.0e-36 155.6 241 43.2
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.0e-36 155.6 171 50.3
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 6.8e-36 154.8 228 43.9
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.2e-35 154.1 233 43.3
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-35 154.1 227 41.9
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-35 154.1 227 41.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-35 153.7 226 42.5
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.5e-35 153.7 242 43.4
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.0e-35 153.3 251 41.0
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.0e-35 153.3 156 53.2
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.0e-35 153.3 156 53.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 4.4e-35 152.1 181 47.0
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-35 151.8 173 48.0
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 5.8e-35 151.8 170 50.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-34 150.6 173 48.0
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-34 150.2 173 48.0
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-34 150.2 181 46.4
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.7e-34 150.2 244 41.4
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.2e-34 149.8 233 39.1
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 4.9e-34 148.7 173 48.0
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.9e-34 148.7 170 48.8
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.3e-34 147.9 226 42.5
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 8.3e-34 147.9 242 41.7
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-33 146.7 169 47.9
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.9e-33 146.7 170 48.2
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 3.2e-33 146.0 240 43.8
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 4.1e-33 145.6 220 41.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 7.1e-33 144.8 171 46.8
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 7.1e-33 144.8 161 50.9
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 7.1e-33 144.8 226 40.7
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.2e-32 144.1 157 49.0
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 4.6e-32 142.1 191 50.3
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-32 141.7 198 42.4
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-31 140.6 164 50.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 3.0e-31 139.4 238 39.9
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.1e-30 137.5 239 39.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.1e-30 137.5 267 40.1
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.9e-30 136.7 236 39.0
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 4.3e-30 135.6 204 44.1
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.3e-30 135.6 92 81.5
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 7.3e-30 134.8 143 51.0
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.3e-30 134.8 155 45.8
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-29 132.9 170 43.5
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 6.2e-29 131.7 217 41.9
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.8e-28 130.2 211 41.7
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.1e-28 129.4 230 41.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.1e-28 129.4 196 42.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 4.0e-28 129.0 240 38.3
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 4.0e-28 129.0 233 38.6
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.2e-28 128.6 223 40.8
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.2e-28 128.6 84 76.2
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 6.8e-28 128.3 236 39.4
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 4.4e-27 125.6 95 67.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.8e-27 125.2 199 40.7
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 9.9e-27 124.4 245 40.8
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 4.9e-26 122.1 173 41.0
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 4.9e-26 122.1 241 36.1
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-25 120.6 155 47.1
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.9e-25 120.2 163 41.7
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.4e-25 119.8 174 46.6
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.2e-25 119.4 199 41.2
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 5.4e-25 118.6 149 45.6
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 6.0e-24 115.2 167 49.1
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 7.8e-24 114.8 238 34.9
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 7.8e-24 114.8 233 38.2
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.3e-23 114.0 174 47.7
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.7e-23 113.6 194 39.2
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.1e-22 110.9 243 33.3
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.1e-22 110.9 224 34.8
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.1e-22 110.9 179 40.2
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 2.5e-22 109.8 210 37.6
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 3.3e-22 109.4 226 34.5
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 4.3e-22 109.0 222 35.1
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 7.3e-22 108.2 164 43.9
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.2e-21 107.5 204 41.7
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.2e-21 107.5 191 40.3
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 3.6e-21 105.9 218 33.9
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 3.6e-21 105.9 236 33.1
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 8.1e-21 104.8 94 59.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.1e-20 104.4 218 37.6
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.2e-19 100.9 225 36.4
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.2e-18 96.7 215 36.3
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.9e-18 95.5 124 43.5
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-13 80.9 134 36.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 3.6e-13 79.3 102 46.1
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 7.6e-11 71.6 89 41.6
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-10 70.5 49 77.6
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.4e-09 65.5 38 86.8
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-07 60.5 110 31.8
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 2.3e-07 60.1 133 33.8


User provided reference genes

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