Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.4e-237 825.1 407 100.0
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.9e-194 682.6 399 85.5
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.1e-189 666.8 428 80.4
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.2e-188 663.3 397 83.6
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 6.6e-187 657.5 419 80.7
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.3e-186 654.8 400 82.8
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.9e-182 642.1 397 79.8
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.9e-182 641.3 389 81.7
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 5.4e-181 637.9 412 77.9
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 4.6e-180 634.8 400 77.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-179 633.3 410 78.3
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.8e-177 625.5 402 77.6
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 6.2e-177 624.4 399 77.7
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 8.0e-177 624.0 409 75.3
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 1.1e-176 623.6 364 84.3
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.4e-176 623.2 403 76.4
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.8e-176 622.9 403 76.4
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 2.3e-176 622.5 400 77.0
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 5.2e-176 621.3 405 75.1
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 6.8e-176 620.9 401 77.1
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.2e-175 620.2 405 75.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.2e-175 620.2 398 75.9
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.6e-175 619.0 399 75.9
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 5.8e-175 617.8 398 76.4
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 9.8e-175 617.1 402 77.6
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.2e-174 615.9 398 76.1
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.9e-174 615.5 399 75.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 3.7e-174 615.1 439 71.8
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.4e-173 613.2 403 75.7
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.4e-173 613.2 403 75.7
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.4e-173 613.2 418 73.0
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 7.0e-173 610.9 395 76.2
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 9.2e-173 610.5 396 75.8
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.5e-172 608.6 430 71.6
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.5e-172 608.6 409 74.3
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.5e-172 608.6 405 74.8
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 7.8e-172 607.4 348 82.8
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.7e-171 606.3 399 75.7
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 3.0e-171 605.5 405 74.3
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 3.9e-171 605.1 390 76.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.9e-171 605.1 412 73.1
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 5.0e-171 604.7 388 77.1
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.5e-170 603.2 406 73.2
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 5.6e-170 601.3 393 75.1
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 9.5e-170 600.5 351 81.5
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 3.1e-168 595.5 401 74.3
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.5e-167 593.2 396 75.0
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.5e-167 593.2 352 82.1
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.6e-167 592.4 400 73.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 2.6e-167 592.4 400 74.0
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 3.4e-167 592.0 405 73.6
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 4.4e-167 591.7 404 72.5
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 5.8e-167 591.3 376 76.6
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.7e-166 589.7 405 74.3
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.7e-166 589.7 401 73.1
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 6.4e-166 587.8 425 68.2
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.1e-165 587.0 405 72.8
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.9e-165 586.3 399 73.2
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 3.2e-165 585.5 403 72.7
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 3.2e-165 585.5 392 74.5
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 4.1e-165 585.1 401 74.3
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 4.1e-165 585.1 401 72.3
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 7.1e-165 584.3 404 73.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.2e-164 583.6 405 72.6
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-164 583.6 381 73.8
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 2.1e-164 582.8 400 73.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 7.8e-164 580.9 402 71.1
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-163 580.1 402 71.6
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.3e-163 580.1 370 75.1
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-163 579.3 403 71.7
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 5.1e-163 578.2 401 73.1
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 5.1e-163 578.2 401 72.6
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 8.6e-163 577.4 400 70.0
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 8.6e-163 577.4 382 73.3
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.5e-162 575.9 370 75.4
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 3.3e-162 575.5 403 72.0
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 4.3e-162 575.1 396 73.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.3e-162 574.3 412 71.1
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.2e-161 573.5 402 73.6
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.2e-161 573.5 402 71.4
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.8e-161 572.4 398 71.4
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.1e-160 570.5 403 71.0
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.1e-160 570.5 374 74.9
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.4e-160 569.3 406 70.7
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.1e-160 568.9 404 71.0
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.1e-160 568.9 399 70.7
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 3.1e-160 568.9 402 71.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-159 567.0 402 70.4
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.6e-159 565.8 359 72.1
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 3.4e-159 565.5 350 78.3
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.4e-159 565.5 402 70.9
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 4.4e-159 565.1 369 75.1
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 4.4e-159 565.1 340 80.6
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 9.9e-159 563.9 409 69.7
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-157 560.1 343 77.6
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 7.1e-157 557.8 337 78.0
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 2.1e-156 556.2 341 77.4
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.3e-155 553.5 410 70.0
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.3e-155 553.5 410 70.0
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.7e-155 553.1 364 76.1
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.3e-155 552.7 375 72.0
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.9e-155 552.0 370 73.5
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 6.6e-155 551.2 370 70.5
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 6.6e-155 551.2 361 73.4
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 3.3e-154 548.9 410 69.5
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.2e-153 547.0 384 70.1
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 6.2e-153 544.7 298 86.2
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.4e-152 543.5 387 71.3
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 5.4e-149 531.6 407 67.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 9.3e-149 530.8 402 67.4
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 6.0e-148 528.1 332 76.5
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.7e-147 526.6 388 68.3
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 5.1e-147 525.0 364 71.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 3.3e-146 522.3 353 71.4
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.6e-145 520.0 283 84.8
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.8e-144 516.5 297 80.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.2e-143 513.8 329 73.3
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 4.2e-141 505.4 336 69.6
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 2.3e-139 499.6 403 65.3
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.5e-138 496.9 331 69.2
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-137 493.8 420 61.4
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.7e-137 492.3 337 73.6
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 8.4e-134 481.1 334 68.0
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-132 476.9 279 79.6
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 2.7e-132 476.1 431 61.9
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 3.9e-131 472.2 335 69.9
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.0e-126 457.6 335 63.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.0e-115 421.0 337 58.5
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 6.3e-113 411.8 349 60.7
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 4.1e-112 409.1 263 75.7
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.5e-111 407.1 328 65.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 4.7e-108 395.6 321 58.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.4e-104 383.3 295 60.0
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 9.1e-104 381.3 331 62.5
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.7e-97 359.4 188 93.1
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 6.5e-94 348.6 246 74.0
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 9.7e-90 334.7 254 68.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-83 314.7 354 51.7
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.2e-77 292.7 402 44.3
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.0e-74 283.9 157 84.7
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.9e-71 272.3 275 53.1
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.1e-64 251.5 143 78.3
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 9.2e-64 248.4 313 47.6
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 4.4e-58 229.6 236 53.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.8e-55 218.8 270 48.5
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-48 197.6 334 39.5
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-47 193.7 185 58.4
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.1e-45 188.3 116 76.7
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.3e-45 186.8 132 68.9
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-44 183.3 185 57.3
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-44 183.3 185 57.3
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-40 171.0 122 68.9
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-30 138.7 159 50.3
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-30 138.7 159 50.3
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.9e-29 134.4 230 37.4
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.8e-19 101.3 172 36.0
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.7e-17 94.7 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.7e-17 94.7 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-13 81.3 51 74.5
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 2.9e-09 67.4 41 80.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-07 61.6 39 71.8
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 6.1e-07 59.7 44 63.6
Ca_28728_v3 Cicer arietinum L. HOM05D004356 ORTHO05D148060 1.8e-06 58.2 229 28.4
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 3.0e-06 57.4 56 53.6
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 3.0e-06 57.4 56 53.6
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 3.0e-06 57.4 35 71.4


User provided reference genes

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