Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 6.9e-142 507.3 256 100.0
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.4e-102 375.9 286 72.0
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 4.1e-94 348.6 306 63.7
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.6e-93 346.7 291 64.3
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 8.3e-87 324.3 260 67.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.8e-86 323.2 291 59.1
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 2.4e-86 322.8 284 60.9
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 5.9e-85 318.2 288 61.8
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 3.3e-83 312.4 278 62.9
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.6e-82 310.1 292 59.9
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.6e-82 308.9 285 58.6
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 6.1e-82 308.1 288 59.4
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 6.1e-82 308.1 294 58.5
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 8.0e-82 307.8 285 58.9
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.0e-81 307.4 287 59.2
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.0e-81 307.4 278 62.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.8e-81 306.6 292 57.9
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 8.9e-81 304.3 282 59.9
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.0e-80 303.1 283 59.7
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 3.4e-80 302.4 284 59.2
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 3.4e-80 302.4 287 58.5
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 5.8e-80 301.6 288 57.6
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 7.5e-80 301.2 289 59.2
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.7e-79 300.1 291 58.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.2e-79 299.7 285 57.9
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.2e-79 299.7 286 55.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.2e-79 299.7 285 58.2
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.7e-79 298.9 289 57.1
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.7e-79 298.9 289 59.2
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 8.3e-79 297.7 289 57.1
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.9e-78 296.6 287 57.8
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 2.4e-78 296.2 287 57.5
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 7.0e-78 294.7 286 56.3
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 2.0e-77 293.1 272 58.5
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 3.5e-77 292.4 190 76.8
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 3.5e-77 292.4 190 75.3
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 6.0e-77 291.6 288 56.9
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.0e-76 290.8 188 76.1
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 2.3e-76 289.7 186 76.9
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.3e-76 289.7 289 57.4
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.9e-76 288.9 188 75.5
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 3.9e-76 288.9 287 56.1
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 6.6e-76 288.1 287 56.1
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.9e-75 286.6 189 74.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.9e-75 286.6 184 76.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.6e-75 285.0 287 54.4
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 7.3e-75 284.6 182 75.8
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.2e-74 283.9 190 72.6
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.1e-74 283.1 292 53.4
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.8e-74 282.7 183 74.9
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 6.2e-74 281.6 183 74.9
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 2.3e-73 279.6 189 72.0
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 2.3e-73 279.6 311 52.7
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 6.8e-73 278.1 183 72.7
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 8.9e-73 277.7 290 53.1
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.5e-72 276.9 184 70.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.5e-72 276.9 190 71.1
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 3.4e-72 275.8 286 53.8
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.8e-72 275.0 186 72.0
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 7.5e-72 274.6 190 71.1
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.7e-71 273.5 186 69.9
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.2e-71 273.1 268 56.7
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 6.4e-71 271.6 183 72.1
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.1e-70 270.8 294 53.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 1.1e-70 270.8 255 58.4
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.4e-70 270.4 252 57.5
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.9e-70 270.0 183 69.4
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.9e-70 270.0 181 71.8
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 4.1e-70 268.9 186 74.7
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 9.2e-70 267.7 184 68.5
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.2e-69 267.3 279 53.8
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.1e-69 266.5 277 55.6
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.5e-69 265.8 286 52.4
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 7.8e-69 264.6 183 70.5
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 7.8e-69 264.6 183 69.4
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 7.8e-69 264.6 188 68.6
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.3e-68 263.8 257 55.3
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 2.3e-68 263.1 183 69.9
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.3e-68 263.1 249 58.6
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 8.6e-68 261.2 265 55.1
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 3.3e-67 259.2 182 72.0
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 4.3e-67 258.8 287 50.5
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 7.3e-67 258.1 339 47.8
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 9.5e-67 257.7 186 66.7
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.6e-66 255.8 186 66.1
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 4.7e-66 255.4 286 52.1
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.4e-65 253.8 172 69.8
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.1e-65 252.7 159 75.5
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 8.9e-65 251.1 171 70.8
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 4.4e-64 248.8 185 69.2
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.3e-63 247.3 166 72.9
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.2e-63 246.5 212 59.4
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 4.9e-63 245.4 227 58.6
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.4e-62 241.9 250 54.0
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 4.6e-61 238.8 317 46.4
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.3e-60 236.5 250 53.2
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 8.6e-60 234.6 153 75.8
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.5e-59 233.0 325 44.3
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 4.3e-59 232.3 264 52.7
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.1e-57 226.1 334 42.8
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 5.2e-57 225.3 226 54.0
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.2e-56 224.2 169 65.1
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 2.9e-55 219.5 134 78.4
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.2e-53 214.2 219 55.7
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.2e-53 214.2 144 72.2
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 7.8e-53 211.5 129 77.5
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-52 210.7 151 66.2
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 1.3e-52 210.7 151 66.2
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 5.1e-52 208.8 151 66.2
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 5.1e-52 208.8 151 66.2
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 5.6e-51 205.3 146 69.2
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 7.3e-51 204.9 247 49.0
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.7e-47 193.7 207 55.6
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 5.4e-46 188.7 197 46.7
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 4.6e-45 185.7 111 80.2
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 2.3e-44 183.3 172 50.0
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.9e-43 180.3 197 44.7
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 5.6e-43 178.7 147 61.2
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 3.6e-42 176.0 111 75.7
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.9e-38 163.7 172 45.9
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 4.8e-34 149.1 156 46.2
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 4.0e-25 119.4 178 35.4
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.8e-24 115.5 132 52.3
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.8e-24 115.5 80 67.5
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 4.9e-23 112.5 80 65.0
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 9.3e-22 108.2 82 58.5
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 8.7e-20 101.7 87 60.9
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.5e-19 100.1 83 55.4
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 2.8e-18 96.7 70 62.9
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 8.2e-18 95.1 242 31.0
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 6.9e-17 92.0 151 42.4
CSS0008660 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.9e-12 76.3 67 62.7
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 2.0e-11 73.9 136 41.2
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 7.4e-11 72.0 47 68.1
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.2e-08 64.7 69 49.3
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.4e-08 63.2 53 64.2
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 1.7e-07 60.8 34 82.4
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.9e-06 57.4 52 50.0
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 4.2e-06 56.2 32 81.2
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 7.2e-06 55.5 55 56.4


User provided reference genes

Program Settings