Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 1.9e-92 342.4 166 100.0
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 1.1e-42 177.2 159 55.3
DCAR_009469 Daucus carota HOM05D008739 ORTHO05D010871 1.8e-37 159.8 168 49.4
COL.COLO4_19482 Corchorus olitorius HOM05D008739 ORTHO05D010871 2.5e-31 139.4 162 46.9
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 3.9e-29 132.1 149 43.0
Duzib114G0462 Durio zibethinus HOM05D008739 ORTHO05D010871 5.1e-29 131.7 108 56.5
Hma1.2p1_0161F.1_g072120 Hydrangea macrophylla HOM05D008739 ORTHO05D010871 3.7e-27 125.6 162 43.8
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 9.0e-26 120.9 131 41.2
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 2.2e-24 116.3 110 45.5
Peaxi162Scf00131g00137 Petunia axillaris HOM05D008739 ORTHO05D010871 1.9e-23 113.2 132 45.5
PGR044G0285 Punica granatum HOM05D008739 ORTHO05D010871 9.3e-23 110.9 136 47.1
Migut.N00722 Erythranthe guttata HOM05D008739 ORTHO05D010871 1.6e-22 110.2 118 46.6
SalBow2G3501 Salvia bowleyana HOM05D008739 ORTHO05D010871 1.8e-21 106.7 107 50.5
Sopen06g002410 Solanum pennellii HOM05D008739 ORTHO05D010871 3.0e-21 105.9 109 45.0
MD11G1052300 Malus domestica HOM05D008739 ORTHO05D010871 7.4e-20 101.3 164 37.2
Potri.013G158300 Populus trichocarpa HOM05D008739 ORTHO05D010871 2.2e-19 99.8 133 40.6
Ciclev10003504m.g Citrus clementina HOM05D008739 ORTHO05D010871 4.8e-19 98.6 163 38.7
Actinidia23835 Actinidia chinensis HOM05D000032 ORTHO05D009914 1.4e-18 97.1 99 46.5
Manes.02G211000 Manihot esculenta HOM05D008739 ORTHO05D010871 1.4e-18 97.1 162 36.4
Manes.10G109500 Manihot esculenta HOM05D008739 ORTHO05D010871 3.1e-18 95.9 159 35.8
MBI15_g32296_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 2.0e-17 93.2 81 48.1
MBI15_g46028_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 2.0e-17 93.2 83 47.0
Phvul.008G246200 Phaseolus vulgaris HOM05D008739 ORTHO05D010871 3.4e-17 92.4 137 39.4
Medtr5g075520 Medicago truncatula HOM05D008739 ORTHO05D010871 2.2e-16 89.7 155 33.5
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 1.9e-15 86.7 154 37.0
CiPaw.01G083500 Carya illinoinensis HOM05D008739 ORTHO05D010871 3.2e-15 85.9 94 45.7
LjContig00141g0007680 Lotus japonicus HOM05D008739 ORTHO05D010871 7.2e-15 84.7 113 41.6
FAN21G0180 Fragaria x ananassa HOM05D008739 ORTHO05D010871 1.6e-14 83.6 98 41.8
VMungo0647G0030 Vigna mungo HOM05D008739 ORTHO05D010871 2.1e-14 83.2 137 36.5
RcHm_v2.0_Chr5g0073511 Rosa chinensis HOM05D008739 ORTHO05D010871 2.7e-14 82.8 121 35.5
FvH4_3g40790 Fragaria vesca HOM05D008739 ORTHO05D010871 6.1e-14 81.6 141 34.8
FAN11G3221 Fragaria x ananassa HOM05D008739 ORTHO05D010871 6.1e-14 81.6 141 34.8
FAN21G0244 Fragaria x ananassa HOM05D008739 ORTHO05D010871 6.1e-14 81.6 141 34.8
FAN16G3503 Fragaria x ananassa HOM05D008739 ORTHO05D010871 1.0e-13 80.9 141 34.8
Prupe.6G039900 Prunus persica HOM05D008739 ORTHO05D010871 1.8e-13 80.1 165 33.9
arahy.Tifrunner.gnm1.ann1.KWYB1L Arachis hypogaea HOM05D008739 ORTHO05D010871 5.1e-13 78.6 138 34.8
TPR.G28594 Trifolium pratense HOM05D008739 ORTHO05D010871 8.8e-13 77.8 126 38.9
Thecc.09G364600 Theobroma cacao HOM05D008739 ORTHO05D010871 2.0e-12 76.6 133 37.6
arahy.Tifrunner.gnm1.ann1.E8Q4P5 Arachis hypogaea HOM05D008739 ORTHO05D010871 1.7e-11 73.6 138 34.1
CiPaw.13G062800 Carya illinoinensis HOM05D008739 ORTHO05D010871 1.4e-10 70.5 106 37.7
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.4e-10 70.5 95 36.8
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 3.1e-10 69.3 128 32.8
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 4.1e-10 68.9 88 38.6
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 5.3e-10 68.6 70 42.9
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 9.1e-10 67.8 70 41.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.1e-10 67.8 105 30.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.1e-10 67.8 105 30.5
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.2e-09 67.4 70 42.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.2e-09 67.4 116 32.8
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.5e-09 67.0 70 41.4
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 2.0e-09 66.6 69 40.6
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.0e-09 66.6 114 29.8
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.0e-09 66.6 106 32.1
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.6e-09 66.2 108 31.5
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.6e-09 66.2 123 32.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.6e-09 66.2 95 34.7
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 3.4e-09 65.9 127 32.3
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 3.4e-09 65.9 70 41.4
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.5e-09 65.5 70 41.4
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.9e-09 65.1 128 29.7
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 5.9e-09 65.1 70 42.9
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-08 64.3 69 39.1
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-08 64.3 69 39.1
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.0e-08 64.3 94 31.9
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.3e-08 63.9 71 38.0
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-08 63.9 70 41.4
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-08 63.9 106 36.8
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-08 63.9 70 38.6
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.3e-08 63.9 94 33.0
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.3e-08 63.9 67 40.3
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.7e-08 63.5 70 41.4
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 1.7e-08 63.5 73 38.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.7e-08 63.5 70 41.4
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.7e-08 63.5 72 38.9
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 1.7e-08 63.5 94 33.0
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.7e-08 63.5 94 33.0
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.7e-08 63.5 73 39.7
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 2.2e-08 63.2 70 38.6
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.2e-08 63.2 70 38.6
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 2.2e-08 63.2 145 31.7
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.9e-08 62.8 70 37.1
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.9e-08 62.8 70 37.1
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.9e-08 62.8 130 29.2
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.8e-08 62.4 70 41.4
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.8e-08 62.4 70 35.7
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.8e-08 62.4 130 29.2
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 3.8e-08 62.4 79 38.0
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 3.8e-08 62.4 67 41.8
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.8e-08 62.4 70 38.6
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 5.0e-08 62.0 68 38.2
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 5.0e-08 62.0 94 34.0
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 5.0e-08 62.0 70 40.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 5.0e-08 62.0 70 41.4
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 6.5e-08 61.6 124 30.6
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 6.5e-08 61.6 115 34.8
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 8.5e-08 61.2 70 35.7
COL.COLO4_11221 Corchorus olitorius HOM05D000224 ORTHO05D002442 8.5e-08 61.2 102 36.3
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 8.5e-08 61.2 70 38.6
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 8.5e-08 61.2 130 28.5
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-07 60.8 67 37.3
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.1e-07 60.8 70 37.1
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.1e-07 60.8 69 37.7
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.1e-07 60.8 68 35.3
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.4e-07 60.5 70 35.7
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.4e-07 60.5 68 35.3
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.4e-07 60.5 88 30.7
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.4e-07 60.5 70 35.7
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.4e-07 60.5 73 38.4
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.4e-07 60.5 68 39.7
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.4e-07 60.5 68 39.7
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.4e-07 60.5 68 36.8
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.4e-07 60.5 69 39.1
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.9e-07 60.1 68 36.8
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.9e-07 60.1 70 35.7
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.9e-07 60.1 70 35.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.9e-07 60.1 70 35.7
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 1.9e-07 60.1 70 35.7
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.9e-07 60.1 70 35.7
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.9e-07 60.1 70 38.6
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.9e-07 60.1 70 40.0
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 2.5e-07 59.7 110 32.7
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.5e-07 59.7 70 34.3
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.5e-07 59.7 70 40.0
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 2.5e-07 59.7 73 38.4
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 2.5e-07 59.7 69 39.1
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 2.5e-07 59.7 65 33.8
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 2.5e-07 59.7 70 32.9
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.5e-07 59.7 87 33.3
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.2e-07 59.3 70 34.3
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 3.2e-07 59.3 70 35.7
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.2e-07 59.3 71 35.2
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.2e-07 58.9 70 35.7
Haze_24478 Corylus avellana HOM05D000224 ORTHO05D002442 4.2e-07 58.9 73 41.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 4.2e-07 58.9 69 36.2
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 5.5e-07 58.5 68 35.3
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 5.5e-07 58.5 70 37.1
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 7.2e-07 58.2 70 32.9
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 9.4e-07 57.8 67 34.3
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 9.4e-07 57.8 68 36.8
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 9.4e-07 57.8 118 31.4
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 9.4e-07 57.8 108 28.7
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.2e-06 57.4 66 39.4
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 1.2e-06 57.4 68 35.3
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.2e-06 57.4 70 30.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.6e-06 57.0 68 35.3
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.6e-06 57.0 78 38.5
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.6e-06 57.0 70 30.0
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.6e-06 57.0 70 35.7
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.1e-06 56.6 68 35.3
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.1e-06 56.6 68 35.3
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 2.7e-06 56.2 68 35.3
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 3.6e-06 55.8 68 35.3
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 3.6e-06 55.8 68 35.3
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.6e-06 55.8 70 32.9
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.6e-06 55.8 68 35.3
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 4.7e-06 55.5 70 35.7
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 4.7e-06 55.5 68 35.3
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 7.9e-06 54.7 84 31.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 7.9e-06 54.7 109 26.6


User provided reference genes

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