Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia30700 Actinidia chinensis HOM05D002301 ORTHO05D002316 2.1e-144 515.8 276 100.0
Rhsim09G0199500 Rhododendron simsii HOM05D002301 ORTHO05D002316 5.0e-29 132.5 258 41.9
Ciclev10005598m.g Citrus clementina HOM05D002301 ORTHO05D002316 5.5e-28 129.0 243 41.6
Lj1P1002T21 Lonicera japonica HOM05D002301 ORTHO05D002316 7.2e-28 128.6 236 42.4
Manes.14G023900 Manihot esculenta HOM05D002301 ORTHO05D002316 1.6e-27 127.5 249 43.8
Hma1.2p1_0227F.1_g096080 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 8.0e-27 125.2 275 40.7
TAR374G0163 Trochodendron aralioides HOM05D002301 ORTHO05D002316 1.5e-25 120.9 239 39.7
SGA_v2.0_scaffold60G21091 Striga asiatica HOM05D002301 ORTHO05D002316 2.0e-25 120.6 254 42.5
Nn1g01569 Nelumbo nucifera HOM05D002301 ORTHO05D002316 2.6e-25 120.2 265 40.4
MELO3C006931.2 Cucumis melo HOM05D002301 ORTHO05D002316 9.7e-25 118.2 271 37.6
HanXRQChr16g0510521 Helianthus annuus HOM05D002301 ORTHO05D002316 9.7e-25 118.2 236 41.9
ECA236G3171 Erigeron canadensis HOM05D002301 ORTHO05D002316 2.2e-24 117.1 263 38.8
Sed0008964 Sechium edule HOM05D002301 ORTHO05D002316 3.7e-24 116.3 250 38.4
MD01G1205900 Malus domestica HOM05D002301 ORTHO05D002316 1.8e-23 114.0 265 40.0
CsaV3_3G017350 Cucumis sativus L. HOM05D002301 ORTHO05D002316 4.1e-23 112.8 269 35.3
CDE02G1174 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 5.3e-23 112.5 252 37.7
Cc00_g31430 Coffea canephora HOM05D002301 ORTHO05D002316 1.6e-22 110.9 247 37.7
RcHm_v2.0_Chr6g0247211 Rosa chinensis HOM05D002301 ORTHO05D002316 1.6e-22 110.9 233 40.3
COL.COLO4_28023 Corchorus olitorius HOM05D002301 ORTHO05D002316 2.6e-22 110.2 257 38.5
HanXRQChr06g0182191 Helianthus annuus HOM05D002301 ORTHO05D002316 3.5e-22 109.8 256 40.2
FvH4_6g31310 Fragaria vesca HOM05D002301 ORTHO05D002316 1.3e-21 107.8 249 37.8
CAN.G354.67 Capsicum annuum HOM05D002301 ORTHO05D002316 1.7e-21 107.5 247 36.8
FAN15G0279 Fragaria x ananassa HOM05D002301 ORTHO05D002316 1.7e-21 107.5 234 38.5
Prupe.2G298800 Prunus persica HOM05D002301 ORTHO05D002316 1.7e-21 107.5 260 38.1
RcHm_v2.0_Chr2g0138051 Rosa chinensis HOM05D002301 ORTHO05D002316 2.2e-21 107.1 283 37.1
Aqoxy5G04016 Aquilegia oxysepala HOM05D002301 ORTHO05D002316 2.9e-21 106.7 266 36.8
Ah.07g206790 Amaranthus hybridus HOM05D002301 ORTHO05D002316 6.5e-21 105.5 235 39.1
Actinidia03130 Actinidia chinensis HOM05D002301 ORTHO05D002316 1.1e-20 104.8 228 44.7
Oeu045379.1 Olea europaea HOM05D002301 ORTHO05D002316 1.1e-20 104.8 240 40.4
CiPaw.05G263500 Carya illinoinensis HOM05D002301 ORTHO05D002316 1.9e-20 104.0 226 40.3
CDE06G0347 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 1.9e-20 104.0 237 37.6
Glyma.09G134500 Glycine max HOM05D002301 ORTHO05D002316 4.2e-20 102.8 245 36.7
vmacro06644 Vaccinium macrocarpon HOM05D002301 ORTHO05D002316 7.2e-20 102.1 258 35.3
Oeu016788.1 Olea europaea HOM05D002301 ORTHO05D002316 9.4e-20 101.7 240 39.2
Cpa.g.sc107.88 Carica papaya HOM05D002301 ORTHO05D002316 2.1e-19 100.5 282 35.1
VMungo0464G1303 Vigna mungo HOM05D002301 ORTHO05D002316 2.1e-19 100.5 247 37.2
Sabra12G0108600 Salix brachista HOM05D002301 ORTHO05D002316 4.7e-19 99.4 234 38.9
Sopen06g011900 Solanum pennellii HOM05D002301 ORTHO05D002316 6.1e-19 99.0 236 36.4
FAN05G5095 Fragaria x ananassa HOM05D002301 ORTHO05D002316 1.0e-18 98.2 259 37.8
Solyc06g036110.1 Solanum lycopersicum HOM05D002301 ORTHO05D002316 1.4e-18 97.8 235 36.2
Eucgr.A02756 Eucalyptus grandis HOM05D002301 ORTHO05D002316 1.8e-18 97.4 254 36.6
MD07G1276700 Malus domestica HOM05D002301 ORTHO05D002316 1.8e-18 97.4 261 36.8
EL10Ac3g05446 Beta vulgaris HOM05D002301 ORTHO05D002316 3.0e-18 96.7 243 37.9
Gorai.006G049800 Gossypium raimondii HOM05D002301 ORTHO05D002316 6.7e-18 95.5 242 41.3
Atru.chr1.329 Acer truncatum HOM05D002301 ORTHO05D002316 1.2e-17 94.7 263 33.8
Glyma.16G180300 Glycine max HOM05D002301 ORTHO05D002316 1.2e-17 94.7 239 34.7
Sc25g0000630 Simmondsia chinensis HOM05D002301 ORTHO05D002316 2.0e-17 94.0 234 35.0
Ca_25403_v3 Cicer arietinum L. HOM05D002301 ORTHO05D002316 2.6e-17 93.6 241 34.0
CANSAT21G1415 Cannabis sativa HOM05D002301 ORTHO05D002316 3.3e-17 93.2 258 34.5
CAN.G204.1 Capsicum annuum HOM05D002301 ORTHO05D002316 3.3e-17 93.2 264 33.7
Peaxi162Scf00848g00025 Petunia axillaris HOM05D002301 ORTHO05D002316 4.4e-17 92.8 223 39.0
VMungo0464G2013 Vigna mungo HOM05D002301 ORTHO05D002316 4.4e-17 92.8 229 36.2
Gohir.A12G255800 Gossypium hirsutum HOM05D002301 ORTHO05D002316 5.7e-17 92.4 244 38.1
Nitab4.5_0012866g0010 Nicotiana tabacum HOM05D002301 ORTHO05D002316 7.5e-17 92.0 241 35.3
Lj2g0012008 Lotus japonicus HOM05D002301 ORTHO05D002316 9.7e-17 91.7 241 36.1
HPP92_020765 Vanilla planifolia HOM05D002301 ORTHO05D002316 9.7e-17 91.7 234 38.9
CSS0021609 Camellia sinensis var. sinensis HOM05D002301 ORTHO05D002316 1.3e-16 91.3 227 36.1
Phvul.004G110400 Phaseolus vulgaris HOM05D002301 ORTHO05D002316 1.3e-16 91.3 265 32.5
SEGI_27303 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 1.3e-16 91.3 251 34.3
Lsat_1_v5_gn_8_101320 Lactuca sativa HOM05D002301 ORTHO05D002316 1.7e-16 90.9 233 37.3
CANSAT21G1358 Cannabis sativa HOM05D002301 ORTHO05D002316 2.8e-16 90.1 258 34.1
Duzib205G1001 Durio zibethinus HOM05D002301 ORTHO05D002316 2.8e-16 90.1 223 39.0
FvH4_2g02750 Fragaria vesca HOM05D002301 ORTHO05D002316 3.7e-16 89.7 234 35.9
FAN27G2244 Fragaria x ananassa HOM05D002301 ORTHO05D002316 4.8e-16 89.4 234 35.9
Lalb_Chr03g0034771 Lupinus albus HOM05D002301 ORTHO05D002316 4.8e-16 89.4 241 35.3
Medtr6g045643 Medicago truncatula HOM05D002301 ORTHO05D002316 4.8e-16 89.4 249 34.1
Thecc.03G182000 Theobroma cacao HOM05D002301 ORTHO05D002316 4.8e-16 89.4 217 41.9
SalBow4G0317 Salvia bowleyana HOM05D002301 ORTHO05D002316 8.3e-16 88.6 240 40.0
TWI39G0124 Tripterygium wilfordii HOM05D002301 ORTHO05D002316 1.1e-15 88.2 247 40.5
Duzib068G0336 Durio zibethinus HOM05D002301 ORTHO05D002316 2.4e-15 87.0 245 38.8
Migut.F01096 Erythranthe guttata HOM05D002301 ORTHO05D002316 2.4e-15 87.0 232 36.2
vmacro09824 Vaccinium macrocarpon HOM05D002301 ORTHO05D002316 2.4e-15 87.0 193 40.9
Eucgr.K00286 Eucalyptus grandis HOM05D002301 ORTHO05D002316 3.1e-15 86.7 262 32.4
Dinv35234 Davidia involucrata HOM05D002301 ORTHO05D002316 5.3e-15 85.9 236 40.3
FAN24G1777 Fragaria x ananassa HOM05D002301 ORTHO05D002316 5.3e-15 85.9 199 37.2
Zm00001eb038880 Zea mays HOM05D002301 ORTHO05D002316 5.3e-15 85.9 231 35.1
Psat0s2185g0040 Pisum sativum HOM05D002301 ORTHO05D002316 7.0e-15 85.5 244 35.2
Rhsim03G0189300 Rhododendron simsii HOM05D002301 ORTHO05D002316 7.0e-15 85.5 252 34.5
RhsimUnG0027700 Rhododendron simsii HOM05D002301 ORTHO05D002316 7.0e-15 85.5 252 34.5
PGR042G0559 Punica granatum HOM05D002301 ORTHO05D002316 5.9e-14 82.4 238 33.2
PSO339G3723 Papaver somniferum HOM05D002301 ORTHO05D002316 7.7e-14 82.0 269 37.5
Gohir.A09G042200 Gossypium hirsutum HOM05D002301 ORTHO05D002316 1.3e-13 81.3 244 39.8
AL6G35280 Arabidopsis lyrata HOM05D002301 ORTHO05D002316 2.9e-13 80.1 236 36.0
Haze_00023 Corylus avellana HOM05D002301 ORTHO05D002316 6.5e-13 79.0 243 37.4
THA.LOC104821382 Tarenaya hassleriana HOM05D002301 ORTHO05D002316 1.1e-12 78.2 239 33.1
AUR62021143 Chenopodium quinoa HOM05D002301 ORTHO05D002316 1.5e-12 77.8 274 33.2
Gohir.D09G043166 Gossypium hirsutum HOM05D002301 ORTHO05D002316 1.9e-12 77.4 204 40.7
Cfa016271 Carpinus fangiana HOM05D002301 ORTHO05D002316 7.2e-12 75.5 247 38.1
AUR62021110 Chenopodium quinoa HOM05D002301 ORTHO05D002316 9.4e-12 75.1 240 33.3
Sc13g0008940 Simmondsia chinensis HOM05D002301 ORTHO05D002316 9.4e-12 75.1 124 43.5
Nitab4.5_0000080g0160 Nicotiana tabacum HOM05D002301 ORTHO05D002316 1.6e-11 74.3 213 38.5
Potri.012G144600 Populus trichocarpa HOM05D002301 ORTHO05D002316 1.6e-11 74.3 205 37.6
QL09p013347 Quercus lobata HOM05D002301 ORTHO05D002316 3.6e-11 73.2 228 33.3
SEGI_03038 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 8.0e-11 72.0 258 31.0
PGSC0003DMG400029920 Solanum tuberosum HOM05D002301 ORTHO05D002316 1.8e-10 70.9 204 35.3
ATR0680G098 Amborella trichopoda HOM05D002301 ORTHO05D002316 2.3e-10 70.5 241 37.3
Os08g0562600 Oryza sativa ssp. japonica HOM05D002301 ORTHO05D002316 2.3e-10 70.5 240 32.9
HanXRQChr06g0182171 Helianthus annuus HOM05D002301 ORTHO05D002316 3.0e-10 70.1 178 38.2
FAN24G1422 Fragaria x ananassa HOM05D002301 ORTHO05D002316 8.8e-10 68.6 55 60.0
Actinidia31830 Actinidia chinensis HOM05D002301 ORTHO05D002316 1.2e-09 68.2 105 49.5
Sed0015778 Sechium edule HOM05D002301 ORTHO05D002316 1.2e-09 68.2 230 30.0
TWI14G0722 Tripterygium wilfordii HOM05D002301 ORTHO05D002316 2.6e-09 67.0 249 34.5
Dinv20958 Davidia involucrata HOM05D002301 ORTHO05D002316 5.7e-09 65.9 260 29.6
Dinv20985 Davidia involucrata HOM05D002301 ORTHO05D002316 5.7e-09 65.9 260 29.6
AUR62031394 Chenopodium quinoa HOM05D002301 ORTHO05D002316 7.5e-09 65.5 242 34.3
HanXRQChr06g0182181 Helianthus annuus HOM05D002301 ORTHO05D002316 1.7e-08 64.3 252 32.1
Hma1.2p1_2093F.1_g313870 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 2.2e-08 63.9 261 31.4
Thhalv10004867m.g Eutrema salsugineum HOM05D002301 ORTHO05D002316 3.7e-08 63.2 230 30.4
DCAR_009381 Daucus carota HOM05D002301 ORTHO05D002316 6.3e-08 62.4 251 29.9
SEGI_08323 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 6.3e-08 62.4 233 29.6
BcaC04g23510 Brassica carinata HOM05D002301 ORTHO05D002316 8.3e-08 62.0 240 36.2
Hma1.2p1_0101F.1_g049330 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 8.3e-08 62.0 206 32.0
Hma1.2p1_2137F.1_g314910 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 8.3e-08 62.0 263 31.2
Os09g0571200 Oryza sativa ssp. japonica HOM05D002301 ORTHO05D002316 2.4e-07 60.5 238 31.1
CARHR189610 Cardamine hirsuta HOM05D002301 ORTHO05D002316 3.1e-07 60.1 224 34.4
Sc25g0000620 Simmondsia chinensis HOM05D002301 ORTHO05D002316 3.1e-07 60.1 97 42.3
THA.LOC104798699 Tarenaya hassleriana HOM05D002301 ORTHO05D002316 4.1e-07 59.7 249 31.3
GSVIVG01024787001 Vitis vinifera HOM05D002301 ORTHO05D002316 7.0e-07 58.9 256 27.7
TAR375G0028 Trochodendron aralioides HOM05D002301 ORTHO05D002316 9.1e-07 58.5 258 30.2
C09p07460 Brassica napus HOM05D002301 ORTHO05D002316 1.2e-06 58.2 241 34.9
BolC9t53661H Brassica oleracea HOM05D002301 ORTHO05D002316 1.2e-06 58.2 241 34.9
Nitab4.5_0001625g0070 Nicotiana tabacum HOM05D002301 ORTHO05D002316 1.6e-06 57.8 224 29.0
SalBow6G1849 Salvia bowleyana HOM05D002301 ORTHO05D002316 1.6e-06 57.8 274 29.6
AUR62031395 Chenopodium quinoa HOM05D002301 ORTHO05D002316 2.0e-06 57.4 84 44.0
Lalb_Chr19g0130701 Lupinus albus HOM05D002301 ORTHO05D002316 2.0e-06 57.4 238 29.4
Sp7g12160 Schrenkiella parvula HOM05D002301 ORTHO05D002316 3.5e-06 56.6 227 30.0
HPP92_025784 Vanilla planifolia HOM05D002301 ORTHO05D002316 3.5e-06 56.6 256 30.1
Lsat_1_v5_gn_8_641 Lactuca sativa HOM05D002301 ORTHO05D002316 5.9e-06 55.8 89 42.7


User provided reference genes

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