Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 3.1e-67 258.5 140 100.0
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 3.2e-24 115.5 170 53.5
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 7.1e-24 114.4 170 56.5
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 8.7e-22 107.5 170 53.5
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.9e-21 106.3 167 50.9
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.3e-21 105.1 171 50.9
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 7.4e-21 104.4 171 50.9
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.3e-20 103.6 171 49.7
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.8e-20 102.4 170 48.8
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.8e-20 102.4 170 48.8
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 8.1e-20 100.9 171 50.3
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 3.1e-19 99.0 172 48.3
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 3.1e-19 99.0 170 48.8
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 3.1e-19 99.0 170 48.8
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 6.9e-19 97.8 167 49.7
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 9.0e-19 97.4 163 45.4
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 5.8e-18 94.7 171 47.4
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 5.8e-18 94.7 171 46.2
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.0e-17 94.0 170 48.2
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.3e-17 93.6 170 48.2
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 1.3e-17 93.6 167 47.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-17 93.2 172 47.1
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-17 93.2 170 48.2
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 2.2e-17 92.8 170 48.2
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 4.9e-17 91.7 167 46.1
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 6.5e-17 91.3 171 45.6
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 8.4e-17 90.9 170 48.8
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.9e-16 89.7 169 45.6
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 1.9e-16 89.7 170 45.9
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 1.9e-16 89.7 171 46.2
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.9e-16 89.7 170 45.3
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.9e-16 89.7 167 44.9
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 2.5e-16 89.4 167 44.3
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 2.5e-16 89.4 169 45.6
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 3.2e-16 89.0 166 45.8
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 3.2e-16 89.0 161 48.4
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 5.5e-16 88.2 165 47.9
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 7.1e-16 87.8 167 46.7
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.2e-15 87.0 165 47.9
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 1.2e-15 87.0 167 44.3
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 2.1e-15 86.3 164 48.8
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 2.1e-15 86.3 166 44.0
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 2.1e-15 86.3 170 44.1
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 2.1e-15 86.3 171 43.3
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 2.7e-15 85.9 169 43.8
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 3.5e-15 85.5 165 43.0
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 3.5e-15 85.5 171 45.6
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 3.5e-15 85.5 170 45.3
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 6.0e-15 84.7 170 44.7
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 6.0e-15 84.7 164 43.3
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 1.0e-14 84.0 169 43.8
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 1.3e-14 83.6 167 45.5
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 1.3e-14 83.6 169 40.8
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 1.3e-14 83.6 169 47.3
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.8e-14 83.2 170 44.1
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 2.3e-14 82.8 169 42.0
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 3.0e-14 82.4 169 43.2
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 3.0e-14 82.4 169 43.8
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 3.9e-14 82.0 166 44.6
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 3.9e-14 82.0 167 45.5
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 8.7e-14 80.9 164 43.3
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 1.1e-13 80.5 170 44.1
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 1.1e-13 80.5 169 43.2
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 1.5e-13 80.1 164 43.3
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.9e-13 79.7 170 44.7
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 3.3e-13 79.0 170 44.7
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 3.3e-13 79.0 170 44.7
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 3.3e-13 79.0 91 59.3
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 4.3e-13 78.6 138 44.9
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 4.3e-13 78.6 170 42.9
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 5.7e-13 78.2 164 44.5
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 5.7e-13 78.2 164 44.5
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 2.1e-12 76.3 170 43.5
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 2.1e-12 76.3 164 43.3
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 2.8e-12 75.9 168 42.3
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 2.8e-12 75.9 164 42.7
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 3.7e-12 75.5 167 41.9
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.1e-11 73.9 167 38.9
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.4e-11 73.6 164 40.9
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 1.4e-11 73.6 169 46.2
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 2.4e-11 72.8 78 61.5
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 3.1e-11 72.4 168 41.1
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 4.1e-11 72.0 165 40.0
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 4.1e-11 72.0 165 38.2
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 6.9e-11 71.2 172 40.1
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.2e-10 70.5 150 35.3
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 1.5e-10 70.1 168 40.5
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 1.5e-10 70.1 171 42.1
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 1.5e-10 70.1 168 39.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.0e-10 69.7 170 40.6
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 2.6e-10 69.3 168 39.9
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 2.6e-10 69.3 168 39.9
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 3.4e-10 68.9 170 40.6
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 3.4e-10 68.9 170 40.6
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 5.9e-10 68.2 165 38.8
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 7.6e-10 67.8 164 39.6
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 1.0e-09 67.4 81 56.8
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.3e-09 67.0 167 37.1
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 2.2e-09 66.2 164 38.4
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 3.8e-09 65.5 168 38.1
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 3.8e-09 65.5 164 37.8
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 5.0e-09 65.1 164 38.4
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 8.5e-09 64.3 164 37.2
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 1.1e-08 63.9 46 76.1
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.4e-08 63.5 167 36.5
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 1.9e-08 63.2 147 36.7
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 1.2e-07 60.5 164 39.6
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 2.1e-07 59.7 121 39.7
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 1.3e-06 57.0 164 36.6
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 3.0e-06 55.8 170 35.3
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 8.7e-06 54.3 82 46.3


User provided reference genes

Program Settings