Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 2.8e-163 578.6 294 100.0
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 3.6e-142 508.4 294 88.1
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.4e-141 506.5 294 86.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.8e-141 506.1 298 85.9
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.5e-140 503.1 301 85.4
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.5e-137 493.0 297 85.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.0e-136 490.3 297 84.5
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 3.2e-135 485.3 297 82.8
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.2e-134 483.4 295 84.1
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.0e-133 480.3 297 82.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 3.9e-133 478.4 294 82.0
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 6.7e-133 477.6 297 80.8
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 8.8e-133 477.2 296 83.1
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.1e-132 476.9 296 81.1
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.3e-132 475.3 282 85.8
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.3e-132 475.3 297 81.1
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.7e-132 473.8 298 80.2
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.7e-132 473.8 298 80.2
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.3e-131 473.4 298 79.9
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.7e-131 471.9 297 79.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 3.7e-131 471.9 296 81.4
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 6.3e-131 471.1 296 80.1
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.2e-131 470.7 297 81.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 8.2e-131 470.7 297 81.5
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 8.2e-131 470.7 295 80.3
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.1e-130 470.3 297 80.1
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.1e-130 470.3 295 80.0
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 2.4e-130 469.2 297 81.1
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 3.1e-130 468.8 297 81.5
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.1e-130 468.8 293 79.5
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.1e-130 468.8 293 79.5
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.0e-130 467.6 297 80.8
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 7.0e-130 467.6 298 79.2
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.2e-129 466.8 294 82.0
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.6e-129 466.5 295 79.7
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 2.0e-129 466.1 296 79.4
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 2.0e-129 466.1 297 78.1
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 2.6e-129 465.7 302 79.5
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.5e-129 464.9 292 81.2
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 5.9e-129 464.5 296 79.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 5.9e-129 464.5 296 79.7
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.0e-128 463.8 297 77.8
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 1.3e-128 463.4 297 78.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-128 463.0 297 80.8
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 2.9e-128 462.2 297 78.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 3.8e-128 461.8 302 78.8
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 6.5e-128 461.1 296 79.4
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 6.5e-128 461.1 297 79.5
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 8.5e-128 460.7 297 77.1
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 78.5
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 79.5
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.9e-127 459.5 295 78.0
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 6.1e-126 454.5 294 77.9
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.0e-125 453.8 295 77.6
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.8e-125 453.0 315 73.3
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.0e-125 452.2 297 76.8
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.0e-125 451.8 295 77.3
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 6.7e-125 451.1 295 78.0
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.7e-125 451.1 315 73.7
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 6.7e-125 451.1 297 76.8
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 6.7e-125 451.1 297 76.8
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.6e-124 449.1 297 76.4
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 3.3e-124 448.7 297 77.1
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 9.7e-124 447.2 292 76.0
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 9.7e-124 447.2 341 68.9
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.3e-123 446.8 297 75.4
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.7e-123 446.4 297 77.1
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.7e-123 446.4 314 72.3
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.8e-123 445.7 297 78.1
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.7e-123 445.3 292 76.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.4e-122 443.4 296 77.4
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.4e-122 443.4 292 76.4
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.8e-122 443.0 274 81.4
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 5.3e-122 441.4 298 75.8
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 5.3e-122 441.4 297 76.1
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 7.0e-122 441.0 298 75.2
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.2e-121 440.3 298 75.8
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-121 439.9 297 75.4
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.6e-121 439.9 299 74.2
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 3.5e-121 438.7 297 74.7
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.0e-120 434.9 297 74.7
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 5.0e-120 434.9 292 74.0
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 8.5e-120 434.1 297 74.7
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 8.5e-120 434.1 281 77.6
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.5e-119 433.3 291 75.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.5e-119 433.3 296 73.3
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.9e-119 433.0 296 74.0
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.2e-119 432.2 297 74.1
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 3.2e-119 432.2 291 74.6
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.2e-118 430.3 296 73.0
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.2e-118 430.3 297 72.7
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.1e-118 429.5 295 75.3
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.7e-118 429.1 282 77.3
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 8.0e-118 427.6 291 72.9
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 8.0e-118 427.6 291 72.9
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.0e-117 427.2 291 73.2
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.4e-117 426.8 269 80.3
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.8e-117 426.4 291 73.2
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 6.8e-117 424.5 291 73.2
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 6.8e-117 424.5 298 72.1
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 4.4e-116 421.8 291 72.5
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 4.4e-116 421.8 291 72.5
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 9.8e-116 420.6 291 72.9
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 8.3e-115 417.5 292 73.3
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.1e-114 414.1 250 83.2
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.7e-113 411.0 291 71.8
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 7.7e-113 411.0 277 76.2
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 8.8e-109 397.5 296 68.6
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 5.7e-108 394.8 219 89.0
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.2e-106 387.5 320 65.6
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 7.7e-105 384.4 297 70.0
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.4e-98 361.7 291 60.1
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.9e-95 353.2 296 63.2
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 9.5e-95 350.9 218 79.4
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.0e-93 347.4 221 78.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.2e-91 339.7 293 59.0
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.1e-90 337.4 291 58.1
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-90 337.4 279 65.2
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 3.2e-90 335.9 222 75.7
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.6e-89 332.0 291 57.0
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 3.3e-87 325.9 262 60.3
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 7.3e-87 324.7 288 58.3
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 9.5e-87 324.3 220 72.3
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.4e-85 320.5 223 74.4
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 2.0e-84 316.6 295 56.6
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.1e-82 310.8 281 61.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-74 282.3 231 65.8
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.5e-71 273.9 256 55.1
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.2e-68 264.2 176 77.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-65 252.7 177 72.3
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 8.7e-64 248.1 150 84.0
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.0e-60 236.9 162 70.4
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.2e-58 229.6 202 62.9
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 3.6e-54 216.1 143 69.2
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 4.8e-54 215.7 149 71.8
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 7.9e-49 198.4 135 72.6
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 3.7e-46 189.5 266 39.5
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.7e-43 180.6 181 55.8
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 4.9e-43 179.1 138 68.1
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 8.2e-38 161.8 105 78.1
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 7.6e-36 155.2 302 35.1
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.3e-32 144.4 106 70.8
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-32 143.7 132 62.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 6.7e-32 142.1 99 66.7
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.9e-27 126.7 279 30.1
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-23 114.4 116 58.6
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 2.2e-22 110.5 64 87.5
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 9.1e-21 105.1 128 51.6
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 2.6e-20 103.6 81 65.4
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-16 91.7 106 51.9
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-15 87.0 106 50.0
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 1.2e-12 78.2 106 47.2
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 9.4e-10 68.6 52 69.2
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 8.8e-08 62.0 43 67.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 2.0e-07 60.8 60 55.0
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-07 60.8 52 57.7
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 52 53.8
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 52 53.8


User provided reference genes

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