Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28980 Actinidia chinensis HOM05D003581 ORTHO05D004332 9.0e-78 293.5 147 100.0
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 4.1e-54 214.9 140 77.1
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 1.4e-49 199.9 140 73.6
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 6.7e-49 197.6 140 70.0
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 6.7e-49 197.6 140 70.0
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 8.8e-49 197.2 140 69.3
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 9.7e-48 193.7 140 67.9
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 1.4e-46 189.9 140 67.9
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 1.8e-46 189.5 139 68.3
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 5.9e-45 184.5 140 66.4
Oeu015721.1 Olea europaea HOM05D003581 ORTHO05D004332 1.7e-44 183.0 140 65.0
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 2.9e-44 182.2 140 65.7
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 3.8e-44 181.8 140 65.0
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 5.0e-44 181.4 139 65.5
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 5.0e-44 181.4 140 65.7
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 5.0e-44 181.4 140 64.3
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 6.5e-44 181.0 140 65.7
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 1.1e-43 180.3 140 64.3
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 1.9e-43 179.5 140 65.7
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 3.2e-43 178.7 140 63.6
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 4.2e-43 178.3 140 64.3
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 4.2e-43 178.3 140 64.3
PGSC0003DMG400014635 Solanum tuberosum HOM05D003581 ORTHO05D004332 4.2e-43 178.3 140 62.1
Cpa.g.sc9.366 Carica papaya HOM05D003581 ORTHO05D004332 5.5e-43 177.9 140 62.1
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 5.5e-43 177.9 140 61.4
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 5.5e-43 177.9 140 64.3
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 5.5e-43 177.9 140 62.9
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 7.2e-43 177.6 140 64.3
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 1.2e-42 176.8 140 62.1
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 2.7e-42 175.6 140 62.9
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 2.7e-42 175.6 140 64.3
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 3.6e-42 175.3 140 62.1
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 3.6e-42 175.3 140 62.9
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 3.6e-42 175.3 140 63.6
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 3.6e-42 175.3 139 60.4
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 4.7e-42 174.9 140 62.9
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 6.1e-42 174.5 140 63.6
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 6.1e-42 174.5 139 61.2
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 8.0e-42 174.1 140 63.6
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 8.0e-42 174.1 140 62.1
CiPaw.01G170500 Carya illinoinensis HOM05D003581 ORTHO05D004332 1.0e-41 173.7 140 62.1
Prupe.1G207300 Prunus persica HOM05D003581 ORTHO05D004332 1.0e-41 173.7 140 62.1
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 2.3e-41 172.6 140 61.4
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 3.0e-41 172.2 140 62.1
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 3.0e-41 172.2 140 61.4
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 5.2e-41 171.4 138 61.6
DCAR_005472 Daucus carota HOM05D003581 ORTHO05D004332 6.7e-41 171.0 139 62.6
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 8.8e-41 170.6 140 61.4
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 8.8e-41 170.6 139 60.4
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 1.1e-40 170.2 141 64.5
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.5e-40 169.9 140 60.7
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.5e-40 169.9 140 60.7
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 1.5e-40 169.9 140 60.7
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 2.0e-40 169.5 140 61.4
Oeu015722.1 Olea europaea HOM05D003581 ORTHO05D004332 2.0e-40 169.5 133 63.9
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 2.0e-40 169.5 140 59.3
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 2.6e-40 169.1 140 60.0
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 5.7e-40 167.9 140 60.7
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 5.7e-40 167.9 139 61.2
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.3e-39 166.8 140 60.0
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 1.3e-39 166.8 140 60.0
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 1.7e-39 166.4 140 59.3
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 2.2e-39 166.0 141 61.0
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 2.2e-39 166.0 141 61.0
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 2.2e-39 166.0 141 61.0
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 2.2e-39 166.0 140 60.7
vmacro00696 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 2.2e-39 166.0 136 58.8
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 2.2e-39 166.0 140 60.7
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 2.8e-39 165.6 140 60.0
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 4.8e-39 164.9 140 60.7
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 4.8e-39 164.9 140 60.0
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 6.3e-39 164.5 140 60.0
Ciclev10020241m.g Citrus clementina HOM05D003581 ORTHO05D004332 8.2e-39 164.1 139 60.4
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 8.2e-39 164.1 140 60.0
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 8.2e-39 164.1 140 60.0
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 8.2e-39 164.1 140 60.0
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 1.4e-38 163.3 140 57.9
BraA07t30118Z Brassica rapa HOM05D003581 ORTHO05D004332 1.8e-38 162.9 141 59.6
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.8e-38 162.9 140 61.4
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 2.4e-38 162.5 140 60.0
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 3.1e-38 162.2 140 61.4
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 3.1e-38 162.2 140 57.9
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 4.1e-38 161.8 140 58.6
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 4.1e-38 161.8 139 58.3
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 5.3e-38 161.4 140 57.9
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 5.3e-38 161.4 140 59.3
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 5.3e-38 161.4 140 58.6
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 7.0e-38 161.0 140 58.6
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 1.2e-37 160.2 141 58.9
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 1.6e-37 159.8 140 58.6
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 2.0e-37 159.5 140 60.0
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 3.5e-37 158.7 142 58.5
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 3.5e-37 158.7 142 58.5
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 3.5e-37 158.7 142 58.5
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 3.5e-37 158.7 140 56.4
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 3.5e-37 158.7 140 56.4
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 4.5e-37 158.3 140 58.6
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 2.9e-36 155.6 141 57.4
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 2.9e-36 155.6 141 59.6
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 3.8e-36 155.2 141 58.2
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 5.0e-36 154.8 140 54.3
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 6.5e-36 154.5 141 56.7
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 6.5e-36 154.5 140 53.6
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 8.5e-36 154.1 141 56.0
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 8.5e-36 154.1 140 59.3
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 1.1e-35 153.7 142 57.0
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 1.1e-35 153.7 173 48.0
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 1.5e-35 153.3 142 57.0
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 1.5e-35 153.3 140 55.7
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 1.5e-35 153.3 140 59.3
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 3.2e-35 152.1 153 54.9
unitig_747.g21694 Utricularia gibba HOM05D003581 ORTHO05D004332 3.2e-35 152.1 140 52.9
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 5.5e-35 151.4 135 57.0
Nitab4.5_0024222g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 5.5e-35 151.4 150 55.3
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 7.2e-35 151.0 141 54.6
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 7.2e-35 151.0 141 55.3
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 9.4e-35 150.6 137 55.5
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 9.4e-35 150.6 140 57.9
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 1.2e-34 150.2 141 55.3
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 3.6e-34 148.7 167 50.3
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 3.6e-34 148.7 140 55.7
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 6.1e-34 147.9 140 51.4
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 1.0e-33 147.1 142 54.2
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 1.4e-33 146.7 140 55.7
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 2.3e-33 146.0 167 50.3
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 3.0e-33 145.6 140 54.3
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 6.7e-33 144.4 140 55.0
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 8.8e-33 144.1 140 50.7
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 1.5e-32 143.3 139 54.0
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 3.3e-32 142.1 136 52.2
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 4.4e-32 141.7 141 53.2
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 5.7e-32 141.4 140 51.4
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.3e-31 140.2 140 52.1
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 1.7e-31 139.8 140 50.7
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 2.2e-31 139.4 168 47.6
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.4e-30 136.7 138 52.2
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 1.8e-30 136.3 134 48.5
Gohir.D02G010400 Gossypium hirsutum HOM05D000101 ORTHO05D002559 4.1e-30 135.2 110 57.3
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 9.1e-30 134.0 132 52.3
CSS0011136 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 1.4e-25 120.2 108 62.0
CAN.G759.9 Capsicum annuum HOM05D003581 ORTHO05D004332 1.2e-24 117.1 89 66.3
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 2.0e-24 116.3 146 43.2
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 8.3e-23 110.9 140 45.7
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 5.9e-21 104.8 83 62.7
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 1.7e-20 103.2 140 37.1
AagrBONN_evm.TU.Sc2ySwM_228.999 Anthoceros agrestis HOM05D003581 ORTHO05D004332 2.3e-17 92.8 137 38.0
FAN21G2715 Fragaria x ananassa HOM05D003581 ORTHO05D004332 6.8e-17 91.3 140 41.4
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 1.2e-16 90.5 146 36.3
FAN08G0117 Fragaria x ananassa HOM05D003581 ORTHO05D004332 3.4e-16 89.0 133 41.4
FAN03G1615 Fragaria x ananassa HOM05D003581 ORTHO05D004332 5.7e-16 88.2 133 41.4
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 3.7e-15 85.5 141 36.2
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 6.3e-15 84.7 61 63.9
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 1.8e-14 83.2 109 35.8
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 7.8e-13 77.8 143 32.9
CSS0003810 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 3.8e-12 75.5 60 70.0
CSS0015842 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 3.8e-12 75.5 60 70.0
CSS0029377 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 3.8e-12 75.5 60 70.0
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 4.0e-09 65.5 50 56.0
Glyma.07G207902 Glycine max HOM05D003581 ORTHO05D004332 2.6e-08 62.8 66 54.5
FAN02G4325 Fragaria x ananassa HOM05D003581 ORTHO05D004332 4.4e-08 62.0 50 56.0
CAN.G759.10 Capsicum annuum HOM05D003581 ORTHO05D004332 1.7e-07 60.1 47 51.1
SalBow1G4735 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.4e-06 55.1 42 69.0


User provided reference genes

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