Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 2.7e-68 261.9 136 100.0
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 5.5e-37 157.9 130 63.8
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.5e-34 149.8 131 58.8
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 2.5e-34 149.1 129 62.0
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.3e-34 148.7 130 65.4
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 5.6e-34 147.9 132 60.6
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 8.2e-33 144.1 127 57.5
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 9.0e-32 140.6 129 62.8
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 2.6e-31 139.0 130 57.7
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 5.8e-31 137.9 129 59.7
Actinidia11440 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.0e-30 137.1 129 64.3
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 1.0e-30 137.1 128 61.7
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 2.9e-30 135.6 127 55.1
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 3.2e-29 132.1 129 58.9
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 1.6e-28 129.8 131 51.1
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 2.1e-28 129.4 140 57.9
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 6.7e-27 124.4 131 59.5
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 6.7e-27 124.4 128 55.5
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 8.7e-27 124.0 131 56.5
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.9e-26 122.9 126 53.2
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.3e-26 121.7 126 52.4
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 4.3e-26 121.7 126 52.4
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 3.8e-22 108.6 132 51.5
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.9e-21 106.3 132 52.3
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 4.2e-21 105.1 139 49.6
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 7.2e-21 104.4 132 48.5
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 3.6e-20 102.1 132 50.0
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 3.9e-19 98.6 127 51.2
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 3.9e-19 98.6 130 44.6
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 3.9e-19 98.6 124 50.0
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 6.7e-19 97.8 126 49.2
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 1.5e-18 96.7 136 49.3
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 5.7e-18 94.7 118 51.7
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 2.8e-17 92.4 116 47.4
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 4.8e-17 91.7 127 45.7
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 6.3e-17 91.3 128 45.3
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 1.1e-16 90.5 125 46.4
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.4e-16 90.1 132 48.5
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 1.4e-16 90.1 127 48.8
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.8e-16 89.7 127 49.6
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.8e-16 89.7 125 48.0
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 3.1e-16 89.0 129 48.1
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 5.3e-16 88.2 130 44.6
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 5.3e-16 88.2 128 46.9
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 9.1e-16 87.4 127 48.8
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 9.1e-16 87.4 120 45.8
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 3.4e-15 85.5 143 46.9
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 7.7e-15 84.3 119 48.7
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.3e-14 83.6 76 68.4
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 1.7e-14 83.2 119 45.4
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 2.2e-14 82.8 130 40.8
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 2.2e-14 82.8 125 47.2
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 6.5e-14 81.3 132 44.7
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 6.5e-14 81.3 131 42.0
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 1.9e-13 79.7 130 40.8
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.9e-13 79.7 129 43.4
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 4.2e-13 78.6 126 44.4
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.2e-12 77.0 147 37.4
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 1.6e-12 76.6 119 42.9
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 2.7e-12 75.9 118 43.2
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 3.6e-12 75.5 76 53.9
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 7.9e-12 74.3 134 38.1
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 1.0e-11 73.9 145 42.1
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 1.0e-11 73.9 130 43.1
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 1.4e-11 73.6 126 44.4
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.8e-11 73.2 85 52.9
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 3.0e-11 72.4 75 56.0
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 3.9e-11 72.0 125 41.6
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 3.9e-11 72.0 123 43.9
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 6.7e-11 71.2 86 52.3
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 8.8e-11 70.9 77 54.5
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 1.5e-10 70.1 149 40.3
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 2.0e-10 69.7 86 51.2
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 2.0e-10 69.7 112 40.2
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 4.4e-10 68.6 138 39.1
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 7.4e-10 67.8 125 41.6
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 7.4e-10 67.8 125 41.6
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 9.7e-10 67.4 77 53.2
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 9.7e-10 67.4 77 53.2
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 1.3e-09 67.0 137 39.4
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 2.2e-09 66.2 125 42.4
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.2e-09 66.2 75 52.0
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 2.2e-09 66.2 125 42.4
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 2.2e-09 66.2 124 42.7
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 2.2e-09 66.2 146 41.1
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 2.8e-09 65.9 144 38.9
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 2.8e-09 65.9 149 39.6
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.1e-08 63.9 125 40.8
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 1.4e-08 63.5 77 51.9
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 1.8e-08 63.2 125 39.2
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 1.8e-08 63.2 77 49.4
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 2.4e-08 62.8 132 41.7
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 3.1e-08 62.4 38 84.2
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 4.1e-08 62.0 142 41.5
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 9.1e-08 60.8 142 41.5
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 1.2e-07 60.5 125 37.6
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 7.7e-07 57.8 51 64.7
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 5.0e-06 55.1 90 45.6
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 5.0e-06 55.1 54 59.3


User provided reference genes

Program Settings